Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15c01
(401 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 23 0.99
AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex det... 23 1.7
AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex det... 23 1.7
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 23 1.7
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 23 1.7
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 23 1.7
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 23 1.7
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 23 1.7
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 23 1.7
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 23 1.7
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 23 1.7
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 23 1.7
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 23 1.7
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 23 1.7
AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex det... 23 1.7
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 23 1.7
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 22 2.3
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 22 2.3
AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex det... 22 2.3
AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex det... 22 2.3
AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex det... 22 2.3
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 22 2.3
AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex det... 22 3.0
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 22 3.0
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 21 5.3
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 21 5.3
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 21 5.3
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 21 5.3
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 21 5.3
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 6.9
AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase ... 20 9.2
AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase ... 20 9.2
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 23.4 bits (48), Expect = 0.99
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Frame = +1
Query: 70 RTARKHVNHRRE----QRWADKEFKKAH--MGTKWKANPFGGASHAKGIVLEKVGVEAKQ 231
RT + + +RRE Q+ ++E++K M +++ +H K +VLE+ ++K
Sbjct: 30 RTKEERLQYRREAWLVQQEREQEYEKLKRKMILEYELYIKYSHTHEKKLVLERSKTKSKS 89
Query: 232 PNSAIR 249
P S R
Sbjct: 90 PESRDR 95
Score = 21.0 bits (42), Expect = 5.3
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 319 LNHIEENDEVLVAGFGRKGH 378
+N I+E+D VLV + G+
Sbjct: 191 INKIKEHDTVLVVNIEKSGN 210
>AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 22.6 bits (46), Expect = 1.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 319 LNHIEENDEVLVAGFGRKGH 378
+N IEE+D VLV + G+
Sbjct: 175 INKIEEHDTVLVVNIKKSGN 194
>AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 22.6 bits (46), Expect = 1.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 319 LNHIEENDEVLVAGFGRKGH 378
+N IEE+D VLV + G+
Sbjct: 186 INKIEEHDTVLVVNIKKSGN 205
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 22.6 bits (46), Expect = 1.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 319 LNHIEENDEVLVAGFGRKGH 378
+N IEE+D VLV + G+
Sbjct: 175 INKIEEHDTVLVVNIKKSGN 194
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 22.6 bits (46), Expect = 1.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 319 LNHIEENDEVLVAGFGRKGH 378
+N IEE+D VLV + G+
Sbjct: 186 INKIEEHDTVLVVNIKKSGN 205
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.6 bits (46), Expect = 1.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 319 LNHIEENDEVLVAGFGRKGH 378
+N IEE+D VLV + G+
Sbjct: 186 INKIEEHDTVLVVNIKKSGN 205
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.6 bits (46), Expect = 1.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 319 LNHIEENDEVLVAGFGRKGH 378
+N IEE+D VLV + G+
Sbjct: 186 INKIEEHDTVLVVNIKKSGN 205
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.6 bits (46), Expect = 1.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 319 LNHIEENDEVLVAGFGRKGH 378
+N IEE+D VLV + G+
Sbjct: 186 INKIEEHDTVLVVNIKKSGN 205
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.6 bits (46), Expect = 1.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 319 LNHIEENDEVLVAGFGRKGH 378
+N IEE+D VLV + G+
Sbjct: 186 INKIEEHDTVLVVNIKKSGN 205
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.6 bits (46), Expect = 1.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 319 LNHIEENDEVLVAGFGRKGH 378
+N IEE+D VLV + G+
Sbjct: 186 INKIEEHDTVLVVNIKKSGN 205
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 22.6 bits (46), Expect = 1.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 319 LNHIEENDEVLVAGFGRKGH 378
+N IEE+D VLV + G+
Sbjct: 175 INKIEEHDTVLVVNIKKSGN 194
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 22.6 bits (46), Expect = 1.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 319 LNHIEENDEVLVAGFGRKGH 378
+N IEE+D VLV + G+
Sbjct: 186 INKIEEHDTVLVVNIKKSGN 205
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 22.6 bits (46), Expect = 1.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 319 LNHIEENDEVLVAGFGRKGH 378
+N IEE+D VLV + G+
Sbjct: 186 INKIEEHDTVLVVNIKKSGN 205
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 22.6 bits (46), Expect = 1.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 319 LNHIEENDEVLVAGFGRKGH 378
+N IEE+D VLV + G+
Sbjct: 186 INKIEEHDTVLVVNIKKSGN 205
>AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex
determiner protein.
Length = 385
Score = 22.6 bits (46), Expect = 1.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 319 LNHIEENDEVLVAGFGRKGH 378
+N IEE+D VLV + G+
Sbjct: 186 INKIEEHDTVLVVNIEKSGN 205
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 22.6 bits (46), Expect = 1.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 319 LNHIEENDEVLVAGFGRKGH 378
+N IEE+D VLV + G+
Sbjct: 186 INKIEEHDTVLVVNIKKSGN 205
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 22.2 bits (45), Expect = 2.3
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -1
Query: 173 PKGLAFHFVPMWAFLNSLSA 114
PK +A H++ W FL+ +S+
Sbjct: 157 PKLIAKHYLRTWFFLDLISS 176
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 22.2 bits (45), Expect = 2.3
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -1
Query: 173 PKGLAFHFVPMWAFLNSLSA 114
PK +A H++ W FL+ +S+
Sbjct: 157 PKLIAKHYLRTWFFLDLISS 176
>AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 22.2 bits (45), Expect = 2.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 319 LNHIEENDEVLVAGFGRKG 375
+N IEE+D VLV + G
Sbjct: 175 INKIEEHDTVLVVNIEKSG 193
>AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 22.2 bits (45), Expect = 2.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 319 LNHIEENDEVLVAGFGRKG 375
+N IEE+D VLV + G
Sbjct: 186 INKIEEHDTVLVVNIEKSG 204
>AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 22.2 bits (45), Expect = 2.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 319 LNHIEENDEVLVAGFGRKG 375
+N IEE+D VLV + G
Sbjct: 175 INKIEEHDTVLVVNIEKSG 193
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 22.2 bits (45), Expect = 2.3
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -1
Query: 173 PKGLAFHFVPMWAFLNSLSA 114
PK +A H++ W FL+ +S+
Sbjct: 157 PKLIAKHYLRTWFFLDLISS 176
>AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.8 bits (44), Expect = 3.0
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 319 LNHIEENDEVLVAGFGRKG 375
+N IEE D VLV + G
Sbjct: 186 INKIEEQDTVLVVNIEKSG 204
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.8 bits (44), Expect = 3.0
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = +1
Query: 232 PNSAIRKCV 258
PNSA+RKC+
Sbjct: 584 PNSAVRKCM 592
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 21.0 bits (42), Expect = 5.3
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 319 LNHIEENDEVLVAGFGRKGH 378
+N I+E+D VLV + G+
Sbjct: 186 INKIKEHDTVLVVNIEKSGN 205
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.0 bits (42), Expect = 5.3
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 319 LNHIEENDEVLVAGFGRKGH 378
+N I+E+D VLV + G+
Sbjct: 186 INKIKEHDTVLVVNIEKSGN 205
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.0 bits (42), Expect = 5.3
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 319 LNHIEENDEVLVAGFGRKGH 378
+N I+E+D VLV + G+
Sbjct: 186 INKIKEHDTVLVVNIEKSGN 205
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 21.0 bits (42), Expect = 5.3
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 319 LNHIEENDEVLVAGFGRKGH 378
+N I+E+D VLV + G+
Sbjct: 186 INKIKEHDTVLVVNIEKSGN 205
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 21.0 bits (42), Expect = 5.3
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 319 LNHIEENDEVLVAGFGRKGH 378
+N I+E+D VLV + G+
Sbjct: 186 INKIKEHDTVLVVNIEKSGN 205
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 20.6 bits (41), Expect = 6.9
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +1
Query: 373 GHAVGDIPG 399
G AVGD+PG
Sbjct: 42 GSAVGDVPG 50
>AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase
protein.
Length = 492
Score = 20.2 bits (40), Expect = 9.2
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -3
Query: 318 ATVTGDECGHFLSVLNE 268
AT+ D+CG ++LNE
Sbjct: 298 ATILVDDCGCNSTMLNE 314
>AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase
protein.
Length = 628
Score = 20.2 bits (40), Expect = 9.2
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -3
Query: 318 ATVTGDECGHFLSVLNE 268
AT+ D+CG ++LNE
Sbjct: 298 ATILVDDCGCNSTMLNE 314
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,305
Number of Sequences: 438
Number of extensions: 2677
Number of successful extensions: 33
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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