Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15b24
         (403 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   0.99 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   0.99 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   0.99 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   1.7  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   6.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   6.9  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   6.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   9.2  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    20   9.2  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 0.99
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 165 KEQVDVHVSWNVWN 206
           K+ V V+ SWN WN
Sbjct: 687 KDLVSVNKSWNKWN 700


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 0.99
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 165 KEQVDVHVSWNVWN 206
           K+ V V+ SWN WN
Sbjct: 687 KDLVSVNKSWNKWN 700


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 0.99
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 165 KEQVDVHVSWNVWN 206
           K+ V V+ SWN WN
Sbjct: 687 KDLVSVNKSWNKWN 700


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 19/89 (21%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
 Frame = +3

Query: 15  MLYKLLNVLWLVVAVSNAIPGTP----VIDWAERNY-ALVK--INY-EATAYENLIKLKE 170
           M+  L+ ++W+V+ + +   G P    + D    NY  LV+  +N  +A   +  +KL +
Sbjct: 1   MMKSLVGIMWIVLVLISGCSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQ 60

Query: 171 QVDVHVSWNVWNGDIGDIAYVFFDEQQVW 257
            +DV++   +   ++  +   ++D +  W
Sbjct: 61  LIDVNLKNQIMTTNLW-VEQSWYDYKLKW 88


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 358 LMEQPSSLQSLTRMLNCPL 302
           L+ QP    S+ RM +C L
Sbjct: 373 LVRQPEDTMSVDRMQHCEL 391


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 358 LMEQPSSLQSLTRMLNCPL 302
           L+ QP    S+ RM +C L
Sbjct: 373 LVRQPEDTMSVDRMQHCEL 391


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 96  AERNYALVKINYEATAYE 149
           AE NY L++  YE  +Y+
Sbjct: 114 AEENYNLLEDIYETLSYD 131


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 343 SSLQSLTRMLNCPLTITLMVALLLSASP 260
           +S Q L   L   LT+ + V LL  ASP
Sbjct: 124 TSHQHLRTHLRGTLTVNVSVLLLSLASP 151


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = -3

Query: 323 THVKLPAHNNINGSPFTVGVAFPYLLLVKEHVRYVANVAVPYVPTDVNVDLFFELY*IF 147
           +H+ LPA    + SP         L L+ + +  V  V+   VPT   ++  F+   +F
Sbjct: 44  SHLCLPAPRINSKSPLLSCACPDGLKLLSDGLMCVEKVSTTIVPTTQEINKPFKRLELF 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,741
Number of Sequences: 438
Number of extensions: 2413
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)