Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15b22
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5 |Schizos...    68   1e-12
SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces p...    58   1e-09
SPBC11G11.04 |trs20||TRAPP complex subunit Trs20 |Schizosaccharo...    29   0.58 
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   5.4  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    25   9.4  
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy...    25   9.4  
SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    25   9.4  

>SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 67.7 bits (158), Expect = 1e-12
 Identities = 29/79 (36%), Positives = 54/79 (68%)
 Frame = +3

Query: 258 KLMYGMLFSIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVRD 437
           KL++G++FS+++ V KI+    +D F  Y TSKY LH  ETP+ L+ +  T+ +   +  
Sbjct: 47  KLIFGVVFSLRNMVKKITA--DQDQFMSYTTSKYKLHFYETPTNLRLIFITNPKIDSLTH 104

Query: 438 LLKKIYAEIYVKYMIRNPL 494
           +L++IY  +YV++++++PL
Sbjct: 105 VLQQIYTTLYVEFVVKHPL 123


>SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 57.6 bits (133), Expect = 1e-09
 Identities = 27/90 (30%), Positives = 49/90 (54%)
 Frame = +3

Query: 261 LMYGMLFSIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVRDL 440
           ++ G +  + +  ++ISPL    G    +   + +H L+T +G+KFV+ T+ +    R  
Sbjct: 33  VLAGTIHGVHAISTQISPLPGSSGIQLLEAGTFNMHILQTHTGMKFVLFTEKKTTNARLQ 92

Query: 441 LKKIYAEIYVKYMIRNPLCEMGEPIVSDLF 530
           L+K Y E+Y  Y+++NP   +  PI   LF
Sbjct: 93  LQKFY-ELYSDYVLKNPFYTLEMPIKCQLF 121


>SPBC11G11.04 |trs20||TRAPP complex subunit Trs20
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 15/52 (28%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
 Frame = +3

Query: 378 TPSGLKFVMNTDNQ-AQGVRDLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLF 530
           TPS ++F++   NQ A  ++   ++++ E+Y+K ++ +P  +  +PI S  F
Sbjct: 75  TPSNMRFMLLHQNQSADNIKLFFQELH-ELYIKTLM-SPFYQPNQPIRSQAF 124


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -2

Query: 245  TIKYHIDRICINCKWSFFIFSLEYTVSRTKKITNFHKIN-IPDYKNNNINIFDL 87
            TI Y +DR C+ C     I SL    S  K +T+ +  N + D++  +  I ++
Sbjct: 1098 TIDY-LDRNCVTCSDKHVIISLLLVSSWEKFLTSNNYSNYLADFETTHAQIMEM 1150


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 282 SIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSG 389
           S++S++  IS  DPK  F H     ++ + L    G
Sbjct: 471 SVESWLLDISDEDPKFAFVHQWNDAFSFYILNASDG 506


>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 66  CEI*IIH*VEYIDVIVLIIRDIYFMKIRNL 155
           CE+ + H VEY DV  ++ R +   +  NL
Sbjct: 77  CEVLLSHTVEYADVEAILNRALIIAEQHNL 106


>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 239 KYHIDRICINCKWSFFIFS 183
           K H+ ++C+ C +SFFI +
Sbjct: 240 KLHLVQVCLFCWFSFFILN 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,236,167
Number of Sequences: 5004
Number of extensions: 46055
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)