Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15b22
         (534 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   1.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   1.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.5  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   3.4  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   7.9  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   7.9  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   7.9  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   7.9  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   7.9  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   7.9  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 248 YGRQINVRNAFLDKIIRFKDF 310
           Y  Q+  R  +LD+ +RF DF
Sbjct: 80  YSVQLTFREQWLDERLRFNDF 100


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 248 YGRQINVRNAFLDKIIRFKDF 310
           Y  Q+  R  +LD+ +RF DF
Sbjct: 80  YSVQLTFREQWLDERLRFNDF 100


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 160  VLETV-YSKEKIKNDHLQFIHIRSIWYFIVLWKA 258
            + ETV +SKE  K  HLQ +++++   + V+ +A
Sbjct: 1026 MFETVDFSKEDGKEHHLQIMNLKTYTQYSVVVQA 1059


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 215 YIFDRYGTLLYYGRQINVRNAFLDKIIRFKDF 310
           YI+  Y  LL  G  +  +  F+ KI  FK++
Sbjct: 125 YIYHLYMGLLSGGIILRKKREFMQKIWPFKEY 156


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 113 NNNINIFDLMNDSYFTFCYYI 51
           +NN N  +  N++Y   CY I
Sbjct: 86  SNNYNYSNYNNNNYKQLCYNI 106


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 113 NNNINIFDLMNDSYFTFCYYI 51
           +NN N  +  N++Y   CY I
Sbjct: 86  SNNYNYSNYNNNNYKQLCYNI 106


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 113 NNNINIFDLMNDSYFTFCYYI 51
           +NN N  +  N++Y   CY I
Sbjct: 86  SNNYNYSNYNNNNYKQLCYNI 106


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 113 NNNINIFDLMNDSYFTFCYYI 51
           +NN N  +  N++Y   CY I
Sbjct: 86  SNNYNYSNYNNNNYKQLCYNI 106


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 113 NNNINIFDLMNDSYFTFCYYI 51
           +NN N  +  N++Y   CY I
Sbjct: 86  SNNYNYSNYNNNNYKQLCYNI 106


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 113 NNNINIFDLMNDSYFTFCYYI 51
           +NN N  +  N++Y   CY I
Sbjct: 86  SNNYNYSNYNNNNYKQLCYNI 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,417
Number of Sequences: 438
Number of extensions: 3132
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)