Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15b19
         (427 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0075 - 25610386-25610508,25610529-25610583,25610801-256112...    29   1.6  
08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029...    28   2.7  
04_04_0500 - 25677767-25680850                                         28   3.6  
10_07_0162 - 13713504-13714754,13716445-13716522                       27   4.8  
04_03_0314 - 14238620-14240128                                         27   6.3  
01_06_1417 - 37189068-37190321                                         27   6.3  
11_01_0583 + 4636832-4637521                                           27   8.3  
05_01_0196 + 1415664-1416842                                           27   8.3  
03_01_0296 + 2284385-2285629,2287632-2288594                           27   8.3  

>02_05_0075 -
           25610386-25610508,25610529-25610583,25610801-25611240,
           25612951-25613619,25614551-25615870
          Length = 868

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 225 WREALQLQPSRITGI*WPEALYQS*LPPP**HQLHKFVKNR 347
           W EAL L P  + G   P +LYQ  L  P   +L++ V+ R
Sbjct: 192 WSEALNLSPPGVRGGALPPSLYQHLLRAPGPPKLYRGVRQR 232


>08_02_1453 - 27199228-27200579,27200712-27202646,27202905-27202966,
            27203525-27203545,27204305-27204344,27204345-27204792,
            27204866-27204964,27205071-27205394,27205446-27205574,
            27205657-27205875,27205976-27206194,27206436-27206669,
            27206773-27206943,27207466-27207577,27207955-27208010,
            27208083-27208181,27208901-27209134,27209258-27209311,
            27209363-27209422
          Length = 1955

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 241  SFSPVVLREFNGRKHYIKVDCRRHDSTNSISLSKTDNCCSST 366
            SF   V  EF    H   + C+ HD  + ++   TD C S+T
Sbjct: 1347 SFLQDVKEEFIIGYHCDSIVCKMHDLMHDLAKDVTDECASTT 1388


>04_04_0500 - 25677767-25680850
          Length = 1027

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 127 PNSQHRRRSRSLHGRVFDPNRGTSARLQRIGNN 225
           P ++H +  R+LHGR+    RG S  L R+G++
Sbjct: 67  PRARHSQTCRALHGRIL---RGGSPLLGRLGDS 96


>10_07_0162 - 13713504-13714754,13716445-13716522
          Length = 442

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 169 RVFDPNRGTSARLQRIGNNGGKHCSFSPVVLREFNGR 279
           RV+DPN GT A+     ++ G   +F    L   NG+
Sbjct: 339 RVYDPNTGTWAKFMDSKHHLGSSRAFEAAALVTLNGK 375


>04_03_0314 - 14238620-14240128
          Length = 502

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -2

Query: 249 AEAAMLPAIIPDALKPSRGATIGIKNPPMQRTAPPTMLTIRAVKNP 112
           + ++ L  + P  + P R   + + NPP    APPT   +R    P
Sbjct: 6   SSSSSLSFLSPQPIHPRR---VRLPNPPPSTAAPPTPTAVRCTPAP 48


>01_06_1417 - 37189068-37190321
          Length = 417

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 278 GSIISKLTAAAMIAPTP*VCQKQITAARQHILDL 379
           G+I++ L+AA  +     VC+K  TA R+H+  L
Sbjct: 10  GNILAHLSAARDVMVASGVCRKWRTACRKHLHSL 43


>11_01_0583 + 4636832-4637521
          Length = 229

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -2

Query: 285 MLPAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQRTAPP 145
           +L A KF  Y W+   ++ A++P+ L  +  AT  + +P +   A P
Sbjct: 182 VLLATKFN-YIWSLLDLMEAVLPEYLSETGTATTTVPSPDVAAAAAP 227


>05_01_0196 + 1415664-1416842
          Length = 392

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -1

Query: 352 SYLFLTNLWSWCYHGGGSQL*YNASGH*IPVIRLG*SCNASRHYSRCA 209
           +Y F T   SW  H G   L +   G  +P ++L    +A  +Y+ CA
Sbjct: 227 TYCFDTVSCSWS-HAGDWMLPFCGKGEYVPELKLWFGVSAKNNYAPCA 273


>03_01_0296 + 2284385-2285629,2287632-2288594
          Length = 735

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 424 FFSHLIIFISEFKTF*IQNMLTSSSYLFLTNLWSWCYHGG 305
           F+S L+I ++ F +             F+T+LW+  YH G
Sbjct: 658 FWSELLISLAPFGSVGAHEKGLGDGGEFITHLWALLYHAG 697


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,089,810
Number of Sequences: 37544
Number of extensions: 255456
Number of successful extensions: 603
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)