Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15b14
(571 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93396-8|CAB07710.2| 333|Caenorhabditis elegans Hypothetical pr... 31 0.44
AL033509-2|CAA22060.2| 333|Caenorhabditis elegans Hypothetical ... 31 0.44
EU052683-1|ABU48856.1| 249|Caenorhabditis elegans heparan sulfa... 30 1.0
EU052682-1|ABU48855.1| 278|Caenorhabditis elegans heparan sulfa... 30 1.0
AF098987-1|AAC67432.1| 276|Caenorhabditis elegans Heparan sulph... 30 1.0
Z82267-4|CAB05192.1| 285|Caenorhabditis elegans Hypothetical pr... 29 1.8
U97008-11|AAK72054.1| 224|Caenorhabditis elegans Hypothetical p... 29 2.4
AL117204-12|CAB55127.1| 385|Caenorhabditis elegans Hypothetical... 29 2.4
Z81542-3|CAB04415.1| 308|Caenorhabditis elegans Hypothetical pr... 29 3.1
AF099913-8|ABB51194.1| 301|Caenorhabditis elegans Hypothetical ... 28 4.1
Z81528-4|CAB04281.1| 575|Caenorhabditis elegans Hypothetical pr... 28 5.4
L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human nie... 28 5.4
AF067942-6|AAG45579.1| 345|Caenorhabditis elegans Hypothetical ... 28 5.4
Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical pr... 27 7.2
U37429-12|AAA79353.1| 274|Caenorhabditis elegans Alkylguanine d... 27 7.2
AF025469-6|AAR12979.1| 813|Caenorhabditis elegans Hypothetical ... 27 7.2
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ... 27 7.2
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p... 27 9.5
AL032646-12|CAA21685.2| 411|Caenorhabditis elegans Hypothetical... 27 9.5
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein. 27 9.5
>Z93396-8|CAB07710.2| 333|Caenorhabditis elegans Hypothetical
protein ZC15.2 protein.
Length = 333
Score = 31.5 bits (68), Expect = 0.44
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 427 FNVSSANADTWRPR*APSTRACKNGWDIFLRPMFGMPLMLY 549
++VS + DTW + R C +GW +F+RP L ++
Sbjct: 126 YSVSYGSDDTWSLSYNLTGRVCADGWSMFVRPTTNWCLQVF 166
>AL033509-2|CAA22060.2| 333|Caenorhabditis elegans Hypothetical
protein ZC15.2 protein.
Length = 333
Score = 31.5 bits (68), Expect = 0.44
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 427 FNVSSANADTWRPR*APSTRACKNGWDIFLRPMFGMPLMLY 549
++VS + DTW + R C +GW +F+RP L ++
Sbjct: 126 YSVSYGSDDTWSLSYNLTGRVCADGWSMFVRPTTNWCLQVF 166
>EU052683-1|ABU48856.1| 249|Caenorhabditis elegans heparan sulfate
3-O sulfotransferaseisoform b protein.
Length = 249
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/64 (23%), Positives = 25/64 (39%)
Frame = +3
Query: 321 PQFRTIMQYLQTYYNPTPAPDVDEIMCQSCKPANKIQCFECKCRYLASSLSTLDEGLQKW 500
P +RT+ + Q YYN ++ N+ + Y + S D + KW
Sbjct: 144 PVYRTVSDFTQVYYNKLEQNKTLPVLSVEAFKTNEAGIEKINMEYKPMTNSLYDVHISKW 203
Query: 501 LGHF 512
L +F
Sbjct: 204 LKYF 207
>EU052682-1|ABU48855.1| 278|Caenorhabditis elegans heparan sulfate
3-O sulfotransferaseisoform a protein.
Length = 278
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/64 (23%), Positives = 25/64 (39%)
Frame = +3
Query: 321 PQFRTIMQYLQTYYNPTPAPDVDEIMCQSCKPANKIQCFECKCRYLASSLSTLDEGLQKW 500
P +RT+ + Q YYN ++ N+ + Y + S D + KW
Sbjct: 144 PVYRTVSDFTQVYYNKLEQNKTLPVLSVEAFKTNEAGIEKINMEYKPMTNSLYDVHISKW 203
Query: 501 LGHF 512
L +F
Sbjct: 204 LKYF 207
>AF098987-1|AAC67432.1| 276|Caenorhabditis elegans Heparan
sulphotransferase protein 3 protein.
Length = 276
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/64 (23%), Positives = 25/64 (39%)
Frame = +3
Query: 321 PQFRTIMQYLQTYYNPTPAPDVDEIMCQSCKPANKIQCFECKCRYLASSLSTLDEGLQKW 500
P +RT+ + Q YYN ++ N+ + Y + S D + KW
Sbjct: 144 PVYRTVSDFTQVYYNKLEQNKTLPVLSVEAFKTNEAGIEKINMEYKPMTNSLYDVHISKW 203
Query: 501 LGHF 512
L +F
Sbjct: 204 LKYF 207
>Z82267-4|CAB05192.1| 285|Caenorhabditis elegans Hypothetical
protein F38C2.6 protein.
Length = 285
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 454 TWRPR*APSTRACKNGWDIFLRP 522
TW+ +TR CK GW +F RP
Sbjct: 121 TWKSGNGWTTRLCKAGWTLFSRP 143
>U97008-11|AAK72054.1| 224|Caenorhabditis elegans Hypothetical
protein C03G6.5 protein.
Length = 224
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -1
Query: 211 IHLLNSVKKVRPLPSTIKLWLKYFENKKHN-ESISSRNNCASKHTFSKRSYVLNLKLYCN 35
+ L + +KV L K LK F+ + S S NC +K K YV ++K YC+
Sbjct: 75 VRLSDFAEKVDNLDMNDKTKLKEFKRSCDSLHSCYSNLNCTTKSDDEKDKYVESIKQYCD 134
>AL117204-12|CAB55127.1| 385|Caenorhabditis elegans Hypothetical
protein Y116A8C.21 protein.
Length = 385
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 478 STRACKNGWDIFLRP 522
+TR CKNGW +F RP
Sbjct: 128 TTRLCKNGWMLFSRP 142
>Z81542-3|CAB04415.1| 308|Caenorhabditis elegans Hypothetical
protein F49A5.4 protein.
Length = 308
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 485 LVEGAQRGRQVSAFALETLNFVCGLARLTHD 393
+ G Q G+ SA ET++FVC L +D
Sbjct: 157 MTNGTQAGKWASASCTETMSFVCELPATIYD 187
>AF099913-8|ABB51194.1| 301|Caenorhabditis elegans Hypothetical
protein C29F9.4 protein.
Length = 301
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/80 (22%), Positives = 34/80 (42%)
Frame = +3
Query: 27 AYRLQYSLRFNTYDRFENVCFEAQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFTEFNK 206
AY+ + S+ +D FEN+ + D++ S+ + K + +++ T E
Sbjct: 161 AYKRKKSVITEVFDEFENILWSVCSFSDKLTSIS-CYKKEMDPDCLIENVN-TLSNELEN 218
Query: 207 CIVSIKSSFENQANNTDNIH 266
+ + F NTD IH
Sbjct: 219 -FEKVTAEFTKYLVNTDGIH 237
>Z81528-4|CAB04281.1| 575|Caenorhabditis elegans Hypothetical
protein F35E2.5 protein.
Length = 575
Score = 27.9 bits (59), Expect = 5.4
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Frame = -1
Query: 280 MFFTLCMLSVLLA*FSKLLFMETIHLLNSVKKVRPLPSTIK--LW--LKYFENKKHNESI 113
+F+ + +++++ KL E LN+ K + + + IK W L FEN + E I
Sbjct: 8 IFYFIFVIAIIPIVTEKLSLKENKERLNTCGKDKDIYNGIKNNRWHILAAFENGNNIEYI 67
Query: 112 SSRNNCASKHTFSKRSYVLNLKL 44
SS + +++H + +LN ++
Sbjct: 68 SSASLISNRHFITSAFSILNSQM 90
>L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human niemann
pick c disease)related protein 2 protein.
Length = 1274
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 402 QSCKPANKIQCFECKCRYLASSLSTLDEGLQKWLGHFFKT 521
Q C P+N C C +A SL+T + + L HF +T
Sbjct: 953 QFCDPSNATHCSSCSSSSVA-SLTTTEYEFYRNLHHFLET 991
>AF067942-6|AAG45579.1| 345|Caenorhabditis elegans Hypothetical
protein ZK6.4 protein.
Length = 345
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +1
Query: 55 LTRTTASKTCVLKRNCYEMKSI--RCVF 132
+TRTT K C L NC+ I +CVF
Sbjct: 36 ITRTTPVKKCYLGENCFTKTPITQKCVF 63
>Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical protein
C38D4.3 protein.
Length = 1784
Score = 27.5 bits (58), Expect = 7.2
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +3
Query: 72 FENVCFEAQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFTEFNKCIVSIKSSFENQANN 251
FEN FEA + E S L S + + DG+G + + +S+K FE + N
Sbjct: 891 FENEKFEA--MSSEAISSNKLLSAFLPGMIKKDGRGRQKTAKEQEIEISVKKMFERKVQN 948
Query: 252 TD 257
D
Sbjct: 949 DD 950
>U37429-12|AAA79353.1| 274|Caenorhabditis elegans Alkylguanine dna
alkyltransferaseprotein 2 protein.
Length = 274
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +3
Query: 267 NVKNIFSIFLRDEFIKQVPQFRTIMQYLQTYYNPTPAPDVDEIMCQSCK 413
NVK IF+ L+ + + V + Q +++Y+ +DE++ Q K
Sbjct: 50 NVKEIFNCILQTQPLPVVQPCHPVRQPRESFYSSHEHDPMDEVLLQEVK 98
>AF025469-6|AAR12979.1| 813|Caenorhabditis elegans Hypothetical
protein W09B6.1b protein.
Length = 813
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 301 TSSSNKCPNLGPLCNTCKHITIRRRHPT 384
T +++ + +C+T KH+TIR PT
Sbjct: 496 TRGTSRTEAMNTMCSTLKHMTIRSSFPT 523
>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
protein W09B6.1a protein.
Length = 2054
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 301 TSSSNKCPNLGPLCNTCKHITIRRRHPT 384
T +++ + +C+T KH+TIR PT
Sbjct: 496 TRGTSRTEAMNTMCSTLKHMTIRSSFPT 523
>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
C35C5.1 protein.
Length = 2962
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +3
Query: 348 LQTYYNPTPAPDVDEIMCQSCKPANKIQCFECKCRY 455
L T YNP D + C C + I +C C Y
Sbjct: 2060 LPTSYNPDSHDDKLFVPCSGCTSGDVIIIHKCTCAY 2095
>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
protein C35C5.1 protein.
Length = 2962
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +3
Query: 348 LQTYYNPTPAPDVDEIMCQSCKPANKIQCFECKCRY 455
L T YNP D + C C + I +C C Y
Sbjct: 2060 LPTSYNPDSHDDKLFVPCSGCTSGDVIIIHKCTCAY 2095
>AL032646-12|CAA21685.2| 411|Caenorhabditis elegans Hypothetical
protein Y54E2A.12 protein.
Length = 411
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 36 LQYSLRFNTYDRFENVCFEAQLLRDEIDSL 125
L + RFN Y F ++C L+ E+D+L
Sbjct: 184 LSINPRFNYYQGFHDICLTVLLVCGEVDAL 213
>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
Length = 2962
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +3
Query: 348 LQTYYNPTPAPDVDEIMCQSCKPANKIQCFECKCRY 455
L T YNP D + C C + I +C C Y
Sbjct: 2060 LPTSYNPDSHDDKLFVPCSGCTSGDVIIIHKCTCAY 2095
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,946,151
Number of Sequences: 27780
Number of extensions: 309481
Number of successful extensions: 1026
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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