Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15b13
(529 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0111 - 41137822-41138973,41139453-41139540,41139850-411399... 31 0.57
12_01_0527 - 4177928-4178235,4178849-4181438 29 1.7
02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203 29 3.1
05_05_0036 - 21758409-21758531,21758891-21759206,21759964-217611... 28 5.3
03_01_0545 - 4086692-4087591 28 5.3
12_02_0616 - 21246374-21246462,21246605-21247702,21247800-212481... 27 7.1
07_01_0353 + 2563807-2564496,2564595-2564660,2564853-2564918,256... 27 9.3
05_05_0160 + 22829401-22830658,22831671-22831703,22832586-22832728 27 9.3
04_04_0859 + 28805836-28805842,28806405-28806492,28807474-288075... 27 9.3
>01_07_0111 - 41137822-41138973,41139453-41139540,41139850-41139969,
41140165-41140211,41140796-41141029,41141305-41141505,
41141506-41143407,41144140-41145303,41145574-41145879
Length = 1737
Score = 31.1 bits (67), Expect = 0.57
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 463 TIVSFFILGHDVYIGKLKRFNKVMAYTLNLPSLRPFEIC 347
T + +L DVY + F K A +PS+ PFE+C
Sbjct: 1598 TAAPYTVLRRDVYRPFVAAFAKATARITRMPSVAPFELC 1636
>12_01_0527 - 4177928-4178235,4178849-4181438
Length = 965
Score = 29.5 bits (63), Expect = 1.7
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +3
Query: 3 HITGTSIPGRLFINRRFLAVNPNGTVYGGTIESDNADTTFKRLAVDRNRIVIQNAIT--C 176
H++G SIP +F +A N N + GT DNA T+ KR N ++I AIT
Sbjct: 576 HLSG-SIP--IFRQHVDIATNGNPDLTNGTRNYDNAPTSGKRRT--HNTVIIVVAITGAL 630
Query: 177 VYLCI 191
V LC+
Sbjct: 631 VGLCL 635
>02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203
Length = 740
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +3
Query: 36 FINRRFLAVNPNGTVYGGTIESDN-ADTTFK--RLAVDRNR 149
F R + NGTVY GTI DN A K RLA +R +
Sbjct: 406 FDERNVIGKGGNGTVYRGTIAKDNGAVVAIKRCRLATERQK 446
>05_05_0036 -
21758409-21758531,21758891-21759206,21759964-21761121,
21761236-21761333
Length = 564
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = +1
Query: 67 QTEPFTAEPLNRTTPTPHSSA----LPLTEIASSFKTPLRVCTC 186
+ +P P N+T+PT HS A +P+++I+ + + C
Sbjct: 38 ELDPQVGSPQNKTSPTKHSLAEPMNMPVSKISKTLTNDFQAAKC 81
>03_01_0545 - 4086692-4087591
Length = 299
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -1
Query: 367 LRPFEICSFRGVPS 326
LRPFE+C FR VP+
Sbjct: 255 LRPFEVCGFRVVPT 268
>12_02_0616 -
21246374-21246462,21246605-21247702,21247800-21248110,
21248550-21249251,21252802-21252912,21253396-21253481,
21253753-21253862,21254085-21254236,21254656-21254765
Length = 922
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = -3
Query: 215 SVQLATPVYAQVHTRNGVLNDDAISVNGKALECGVGVVRFNGSAVNGSVWIYCQKP 48
S QL+T +++ GVL + VNG + G+V + G V+ ++ +Y +P
Sbjct: 28 SRQLSTTLFSYEDRFEGVLLAHEVVVNGDRAKILNGLVPYFGVPVHANLLLYSPQP 83
>07_01_0353 +
2563807-2564496,2564595-2564660,2564853-2564918,
2565044-2565115,2565196-2565261,2565355-2565417,
2565505-2565570,2565963-2566062,2567403-2567504,
2567772-2567995,2568200-2568314,2568653-2568763,
2568873-2569088,2569426-2569624,2570690-2570790,
2570872-2570919,2571052-2571236,2571345-2571462,
2571572-2571699,2571981-2572107,2572529-2572647,
2572770-2572938,2573078-2573162,2573247-2573320,
2573449-2573568,2574068-2574251,2574343-2574464,
2574548-2574755,2574885-2574958,2575047-2575185,
2575275-2575456,2575852-2576007,2576153-2576284,
2576508-2576566,2576913-2576945,2577065-2577196,
2577303-2577479
Length = 1675
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 212 VQLATPVYAQVHTRNGVLNDDAISVNGKALECGVGVVRF 96
V+ ATP + VH ++ D+ I NGK G+ +F
Sbjct: 650 VKAATPSVSSVHVVGDIVEDNTIKGNGKYFGGKEGLSKF 688
>05_05_0160 + 22829401-22830658,22831671-22831703,22832586-22832728
Length = 477
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 55 WQ*IQTEPFTAEPLNRTTPTPHSSALPLTEIAS 153
W + +PF AEP R P S LP + S
Sbjct: 254 WGAVSVDPFAAEPDFRFVELPSGSVLPAADAIS 286
>04_04_0859 + 28805836-28805842,28806405-28806492,28807474-28807558,
28807638-28807763,28807819-28807968,28808497-28808541,
28808612-28808875,28809843-28809887,28810395-28810430,
28812048-28812816,28813063-28813925,28814024-28814182,
28814440-28814558,28815356-28815417,28816677-28816805,
28817395-28817460,28817757-28817890,28818025-28818162,
28818630-28818889,28818996-28819107,28819590-28819675,
28820655-28820735,28822841-28822928,28823222-28823260,
28823847-28823964,28824063-28824130,28824884-28824981,
28825238-28825397,28825691-28825816,28825876-28825945,
28826046-28826449
Length = 1664
Score = 27.1 bits (57), Expect = 9.3
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +3
Query: 219 KTLSDDCFMREIMEKNNYNTYYKMYDRKLTYVALKNDGTPRKLQISKGRKLGK 377
K L + +REI+++ YNT K + + V++ N T +K KLGK
Sbjct: 885 KRLRLEFIVREIIDQ--YNTLRKQLNNAIPSVSISNSETLHLKMENKSGKLGK 935
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,818,162
Number of Sequences: 37544
Number of extensions: 267941
Number of successful extensions: 657
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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