Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15b08
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    28   0.99 
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    26   3.0  
SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual             25   5.3  
SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce...    25   5.3  
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    25   7.0  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    25   9.2  

>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 364 AKASVLWMNIRLHIDWFSIWIHWIFS 441
           A+   LW  + LH+ WF  +  WI S
Sbjct: 186 ARLGFLWSIVYLHVIWFLYYACWILS 211


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -2

Query: 397 SVYSSTGQKLL---LTRSSAITLGLLICIHYYNI 305
           S Y ++ QKLL   L RS   ++  L+C+ YY+I
Sbjct: 265 SYYDASWQKLLEFGLDRSHLTSVQCLLCLGYYDI 298


>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 484

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +1

Query: 70  VHLCLKSDPATIDTKFT*IKTVERFIYKNNSETSDN 177
           ++ C K+  A++   F+  K++  FIY  N + + N
Sbjct: 396 IYSCCKTPAASVSNTFSSYKSLYDFIYDKNLQNAYN 431


>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 170

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 253 SFISWILFVCSVCGL 297
           +FI WI F+CS+ G+
Sbjct: 57  TFIDWIPFLCSILGI 71


>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 238 SPTSHSFISWILFVCSVCGL*T*YYNSV 321
           SP+S +F+ W+    SV G  T Y ++V
Sbjct: 122 SPSSRAFLCWVCGYVSVLGYATIYASTV 149


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -1

Query: 401 CKRIFIHRTEAFADSELGYHSGVIDLHTLL*YHVY-NPQTEHTNNIQLMNEWDVGEFHLS 225
           C RIF++R+  FA ++   H  +  L+  + YH +  P      ++ L++    GE  + 
Sbjct: 612 CFRIFVYRSALFAFNKSNVHEIIQLLNEPVKYHNFLKPSEALLQHLPLIHPNIYGEVVIE 671

Query: 224 ISH 216
           + +
Sbjct: 672 VEN 674


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,162,655
Number of Sequences: 5004
Number of extensions: 42747
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)