Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15b08
         (527 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-4|CAB00062.1|  360|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z81058-7|CAB02920.1| 1011|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AC024201-17|AAO12395.1|   95|Caenorhabditis elegans Hypothetical...    29   2.1  
AC024201-16|AAF36025.1|  192|Caenorhabditis elegans Hypothetical...    29   2.1  
AC024201-15|AAF36024.1|  220|Caenorhabditis elegans Hypothetical...    29   2.1  
Z81047-14|CAH04642.1|  357|Caenorhabditis elegans Hypothetical p...    27   8.3  
AL032663-8|CAD89752.1|  321|Caenorhabditis elegans Hypothetical ...    27   8.3  

>Z75714-4|CAB00062.1|  360|Caenorhabditis elegans Hypothetical
           protein ZC434.8 protein.
          Length = 360

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
 Frame = -1

Query: 302 VYNPQTEHTNNIQLMNEWDVGEFHLSISHRLAIVDL-IDYKTQLSLVSLLFL*INLSTVL 126
           V+  + +H   I + N  +VGE    +   L +V     +     L  L F   NL T +
Sbjct: 224 VWVNEEDHLRIISMQNGGNVGEVLARLIKGLNLVAAKAPFARHPRLGWLTFCPTNLGTTV 283

Query: 125 ---IHVNLVSIVAGSDFKQRCTQKQCEI 51
              +H+ L  I A  DFK+ C+  + +I
Sbjct: 284 RASVHIKLPKISAKDDFKKICSDMKLQI 311


>Z81058-7|CAB02920.1| 1011|Caenorhabditis elegans Hypothetical
           protein F11E6.7 protein.
          Length = 1011

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -1

Query: 143 NLSTVLIHVNLVSIVAGS--DFK--QRCTQKQCEIARRA 39
           +LS VL   NL  I  G   +FK  Q C QKQCE A+ A
Sbjct: 842 DLSVVLSRKNLAPIFCGGLKNFKKEQLCPQKQCEKAKDA 880


>AC024201-17|AAO12395.1|   95|Caenorhabditis elegans Hypothetical
           protein Y71F9B.13c protein.
          Length = 95

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 56  HIVFVCIFV*NPIRPQSILNSRELKQSRD 142
           H +F C+   N  RPQ+ LN +E ++ RD
Sbjct: 39  HDLFYCVRASNGQRPQAYLNYKEYRRDRD 67


>AC024201-16|AAF36025.1|  192|Caenorhabditis elegans Hypothetical
           protein Y71F9B.13b protein.
          Length = 192

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 56  HIVFVCIFV*NPIRPQSILNSRELKQSRD 142
           H +F C+   N  RPQ+ LN +E ++ RD
Sbjct: 136 HDLFYCVRASNGQRPQAYLNYKEYRRDRD 164


>AC024201-15|AAF36024.1|  220|Caenorhabditis elegans Hypothetical
           protein Y71F9B.13a protein.
          Length = 220

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 56  HIVFVCIFV*NPIRPQSILNSRELKQSRD 142
           H +F C+   N  RPQ+ LN +E ++ RD
Sbjct: 164 HDLFYCVRASNGQRPQAYLNYKEYRRDRD 192


>Z81047-14|CAH04642.1|  357|Caenorhabditis elegans Hypothetical
           protein C41G6.16 protein.
          Length = 357

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 248 DVGEFHLS-ISHRLAIVDLIDYKTQLSLVSLLFL*INLSTVLIHVNLVSIVA 96
           D  +  LS IS   AI+  +D+K  +   S+  L   L+TVL++   + I A
Sbjct: 90  DFSQLFLSFISEMNAIITYLDHKNCIGYTSIFDLVFKLATVLLNETWLMIAA 141


>AL032663-8|CAD89752.1|  321|Caenorhabditis elegans Hypothetical
           protein Y75B12B.10 protein.
          Length = 321

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 248 DVGEFHLS-ISHRLAIVDLIDYKTQLSLVSLLFL*INLSTVLIHVNLVSIVA 96
           D  +  LS IS   AI+  +D+K  +   S+  L   L+TVL++   + I A
Sbjct: 65  DFSQLFLSFISEMNAIITYLDHKNCIGYTSIFDLVFKLATVLLNETWLMIAA 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,955,277
Number of Sequences: 27780
Number of extensions: 238670
Number of successful extensions: 492
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)