Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15b08
         (527 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   3.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   3.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   3.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   5.9  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -2

Query: 109 YRLWPDRILNKDAHKNNVKSRGAHRTCRPACGR 11
           YR     +++KD   NNV+     ++C    GR
Sbjct: 121 YRYEAVAVIHKDLPINNVQGLRGLKSCHTGVGR 153


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -2

Query: 109 YRLWPDRILNKDAHKNNVKSRGAHRTCRPACGR 11
           YR     +++KD   NNV+     ++C    GR
Sbjct: 121 YRYEAVAVIHKDLPINNVQGLRGLKSCHTGVGR 153


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -2

Query: 109 YRLWPDRILNKDAHKNNVKSRGAHRTCRPACGR 11
           YR     +++KD   NNV+     ++C    GR
Sbjct: 121 YRYEAVAVIHKDLPINNVQGLRGLKSCHTGVGR 153


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 288 NRTYKQYPTY 259
           NR YK YP Y
Sbjct: 451 NRMYKSYPNY 460


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,884
Number of Sequences: 438
Number of extensions: 2825
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)