Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15b05
(559 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo... 252 3e-68
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch... 251 5e-68
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce... 26 4.3
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 25 5.7
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 25 7.5
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 25 7.5
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 25 10.0
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 25 10.0
>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 252 bits (616), Expect = 3e-68
Identities = 117/170 (68%), Positives = 140/170 (82%), Gaps = 1/170 (0%)
Frame = +2
Query: 41 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 220
MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV D +G E+ GYV ++ GGNDKQG
Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60
Query: 221 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 400
FPM QGVL RVRLL+ GH CYRPRRDGERKRKSVRGCIV +L+VLAL IV++G Q+
Sbjct: 61 FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQD 120
Query: 401 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEGKE 547
IPGLTD VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KEGK+
Sbjct: 121 IPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGKK 170
>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 251 bits (615), Expect = 5e-68
Identities = 116/170 (68%), Positives = 140/170 (82%), Gaps = 1/170 (0%)
Frame = +2
Query: 41 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 220
MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV D +G E+ GYV ++ GGNDKQG
Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60
Query: 221 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 400
FPM QGVL RVRLL+ GH CYRPRRDGERKRKSVRGCIV +L+VLAL I+++G Q+
Sbjct: 61 FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQD 120
Query: 401 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEGKE 547
IPGLTD VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KEGK+
Sbjct: 121 IPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGKK 170
>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 445
Score = 25.8 bits (54), Expect = 4.3
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -3
Query: 110 ACARPPLRTTSGIPLPGTKRLTS*LRSIPSNVSHEK 3
A PP T S IP GT+ L + P NV +
Sbjct: 367 AAVNPPATTVSFIPADGTEPLKLLVNGEPQNVDETR 402
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.4 bits (53), Expect = 5.7
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 496 IIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTLAHNNKSQD 362
+I + K E + GSTFG +G R++ L H+N QD
Sbjct: 98 VIIWHKEEAIPGLGSTFG---SGEKHTENWRSYRRLLGHDNDIQD 139
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 61 PGNGMPEVVRSGGRAQASYLLR 126
PG+G+P +V R AS +LR
Sbjct: 867 PGSGLPLIVNENTRLSASAMLR 888
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 25.0 bits (52), Expect = 7.5
Identities = 23/77 (29%), Positives = 31/77 (40%)
Frame = -3
Query: 275 LTSEDEHGCLSRRPVSSGILACRCRQRHEVHSPSIHRLTDQPLLRRPCAFRKRYEACARP 96
+TSE+ SRRP RC + S+ RLT Q L+ + P
Sbjct: 252 MTSENNRDYFSRRPTLLNTYGNRCSSTDTL--SSLSRLTSQDPLKASLPLQS-------P 302
Query: 95 PLRTTSGIPLPGTKRLT 45
PL +G+ L RLT
Sbjct: 303 PLAPKTGVSL-SRPRLT 318
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 24.6 bits (51), Expect = 10.0
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = -3
Query: 236 PVSSGILACRCRQRHEVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTS 78
P+SS I H H+P + D+ R C F++ +E + P + S
Sbjct: 970 PISSNIPILSVAPFHAHHAPQGYIYVDENSFIRICKFQEDFEYDNKWPYKKVS 1022
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 24.6 bits (51), Expect = 10.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 263 LLMSKGHSCYRPRRDGERKRKSVRGCIVD 349
++ SK +S +P+ G KRK+ R +VD
Sbjct: 97 VVTSKKNSRSKPKNGGASKRKASRRTVVD 125
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,410,433
Number of Sequences: 5004
Number of extensions: 49804
Number of successful extensions: 118
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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