Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15b02
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    27   1.6  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        26   2.7  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    25   4.8  
SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo...    25   6.3  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    25   6.3  
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S...    25   8.4  

>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -1

Query: 289 PHKYLAHQLSTVSILEQHNTGCPHLCSLSCL*VWFE 182
           P+KY  +++  +   +   T CP +CS++   +WF+
Sbjct: 399 PYKYAVYKI--IGRCDLSKTSCPSICSVTEDYIWFQ 432


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 21/80 (26%), Positives = 34/80 (42%)
 Frame = +1

Query: 85   YMKMYFRVQLLILVSIAVSNANILQGTVDINRLQTILKDNLKSKDVGTLYYAVRGLKQLK 264
            Y K       + + S AVS      G+  +  ++T     +   DV T       ++  K
Sbjct: 877  YEKSIAYTSTIDIPSKAVSRVVGRNGST-VENIRTQFDVKIDIGDVSTEETTPVSVRGAK 935

Query: 265  ADVPNICEDLKTIKYDVKNL 324
            ADV N  +++  I  +VKNL
Sbjct: 936  ADVENAIKEISAIAEEVKNL 955


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
 Frame = +1

Query: 178 RLQTILKDNLKSKDVGTLYYAVRGLKQLKADVPNICEDLKTIKYDVK-----NLEQVFYL 342
           RL   +KD   ++   T    + GL++LKAD+    E L    YD+K       E+V  L
Sbjct: 583 RLYIWMKDGDSTETSLTFKRIIHGLERLKADIALHSEILCFQLYDLKRDGTLRTEEVVEL 642

Query: 343 TNLALLTNC 369
           +   +L  C
Sbjct: 643 SESLILLCC 651


>SPAC4G8.06c |trm12||tRNA methyltransferase Trm12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +1

Query: 286 EDLKTIKYDVKNLEQVFYLTNLALLTNCQNSLKPEV 393
           ED++T   +V +        N   +TNC  S  P V
Sbjct: 373 EDIETYSSEVNSCFSKMLAKNTVCVTNCVKSFSPRV 408


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 376 SLKPEVLATPTQALDKKGCHHTGTVLSCVYTKKLLVKELF 495
           SL P++LA     LD         VLSCV+T ++ +K+ F
Sbjct: 449 SLVPKILA---YLLDAYSYERDEEVLSCVWTTEVPLKDAF 485


>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 272

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 321 LRASVLPHKLGPSYKLSEFTQA*SIGDSNPSTRQKRM 431
           ++A  + +KLG  Y L EF +  + G+     ++KR+
Sbjct: 76  IKAQDVWNKLGTLYNLKEFEELEAPGNEEVKAKEKRI 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,074,019
Number of Sequences: 5004
Number of extensions: 42379
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)