Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15b02
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1098 - 8691312-8692430,8692640-8693509,8694522-8696105,869...    33   0.096
11_06_0513 + 24466131-24469487                                         31   0.68 
08_01_0040 - 287030-287569,287981-288196,288269-288535                 30   0.90 
04_01_0630 - 8354628-8355803,8355837-8355926                           30   1.2  
05_01_0128 + 866817-866859,867789-867874,868142-868231,868337-87...    27   8.4  
03_05_0626 + 26233178-26233233,26234083-26234284,26234800-262349...    27   8.4  
02_04_0432 + 22885880-22886168,22886755-22886801,22888496-22888939     27   8.4  

>01_01_1098 -
           8691312-8692430,8692640-8693509,8694522-8696105,
           8696199-8696258,8696336-8696414,8696494-8696555,
           8697129-8697204,8697367-8697419,8698181-8698270,
           8698411-8698458
          Length = 1346

 Score = 33.5 bits (73), Expect = 0.096
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = +1

Query: 1   EFLSINEKLKKILTNF*HSLLVINTIKTYMKMYFRVQLLILVSIAVSNANILQGTVDINR 180
           E LSIN     I+TN    LL+I  ++       RVQ+  L+ + +  + IL   +  + 
Sbjct: 566 EMLSINSDAANIITNGPIMLLLIKMLRLSKTSVLRVQIASLMGLLIRYSTILDIELASSG 625

Query: 181 LQTILKDNLKSK 216
           +   L D L+ K
Sbjct: 626 IFNALSDGLRDK 637


>11_06_0513 + 24466131-24469487
          Length = 1118

 Score = 30.7 bits (66), Expect = 0.68
 Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
 Frame = +1

Query: 109  QLLILVSIAVSNANILQGTVDINRLQTILKDNLKSKDVGTLYYAVRGLKQLKADVPNICE 288
            +L  LVS+ +S   I      I ++ ++   NL   D+G L  ++  L+ L+    + CE
Sbjct: 661  RLQYLVSLNISQTCIATVPDYIGKIHSLRYLNLSQTDIGKLPDSICSLRLLQTLQLSRCE 720

Query: 289  DLKTIKYDV--------KNLEQVFYLTNLAL-LTNCQNSLKPEVLATPTQALDKKGC 432
             L  +  ++         +LE  +YL+ +   ++N +N  +  VL  P  +LDK  C
Sbjct: 721  KLTKLPQNIGSVTSLQRLDLEGCYYLSEMPQDISNLKNVKELNVLECP--SLDKMPC 775


>08_01_0040 - 287030-287569,287981-288196,288269-288535
          Length = 340

 Score = 30.3 bits (65), Expect = 0.90
 Identities = 21/84 (25%), Positives = 41/84 (48%)
 Frame = +1

Query: 22  KLKKILTNF*HSLLVINTIKTYMKMYFRVQLLILVSIAVSNANILQGTVDINRLQTILKD 201
           ++KKI+T    +LL I  I++Y +   +   L++  I    A  +   +D+  L +   +
Sbjct: 105 QIKKIVTT---NLLTIKKIRSYSQTRQQEVRLVMAKIVEEAATHM--AIDLTELLSCYSN 159

Query: 202 NLKSKDVGTLYYAVRGLKQLKADV 273
           N+K + +  L   VRG+     D+
Sbjct: 160 NMKPQMIAKLQAEVRGVVSKGQDI 183


>04_01_0630 - 8354628-8355803,8355837-8355926
          Length = 421

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 121 LVSIAVSNANILQGTVDINRLQTILKDNLKSKDVG 225
           ++S+ V + NI+  T DIN  +  LK   + KD+G
Sbjct: 76  IISVYVDDLNIIGNTQDINEARHHLKTEFEMKDLG 110


>05_01_0128 +
           866817-866859,867789-867874,868142-868231,868337-870214,
           870606-870795,870888-871483
          Length = 960

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 96  VLSSTIAHLSEYSSK*CQHSPRHCGYQSPSNHT 194
           VLSS  +H  E S+  C     HC ++    H+
Sbjct: 339 VLSSETSHFGEMSTNNCSRPQHHCMHRGRVTHS 371


>03_05_0626 +
           26233178-26233233,26234083-26234284,26234800-26234968,
           26235767-26238768
          Length = 1142

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 370 QNSLKPEVLATPTQALDKKGCHHTGTVLSCVYTKKLLVKEL 492
           Q +LK +VLA   +A+ +K   +    +S +   KLL K+L
Sbjct: 503 QEALKEQVLALKREAIAQKKAGNVAEAMSLLRKAKLLEKDL 543


>02_04_0432 + 22885880-22886168,22886755-22886801,22888496-22888939
          Length = 259

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 96  VLSSTIAHLSEYSSK*CQHSPRHCGYQSPS 185
           V S++ A+L+E   K    SP  C +Q+PS
Sbjct: 177 VASTSTAYLAEGKPKASSSSPSDCSFQTPS 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,963,219
Number of Sequences: 37544
Number of extensions: 225863
Number of successful extensions: 437
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)