Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15b02
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006833-3|AAF60947.2|  436|Caenorhabditis elegans Hypothetical ...    32   0.20 
AC024818-4|AAF60782.5|  457|Caenorhabditis elegans Hypothetical ...    30   1.1  
Z82055-1|CAB04843.1|  405|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AF078789-3|AAK68487.1|  295|Caenorhabditis elegans Hypothetical ...    29   2.5  
AF078789-2|AAK21516.1|  318|Caenorhabditis elegans Hypothetical ...    29   2.5  
AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical ...    28   3.3  
AF016672-4|AAD47126.1|  968|Caenorhabditis elegans Hypothetical ...    28   3.3  
U58762-5|AAK39304.2|  496|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AJ431373-1|CAD24083.1|  496|Caenorhabditis elegans putative alph...    28   4.3  
AF077531-5|AAC64615.1|  219|Caenorhabditis elegans Hypothetical ...    28   4.3  
AC006807-4|AAK84618.1|  904|Caenorhabditis elegans Hypothetical ...    27   5.7  
U39471-1|AAA80132.4|  461|Caenorhabditis elegans Intestinal acid...    27   7.6  

>AC006833-3|AAF60947.2|  436|Caenorhabditis elegans Hypothetical
           protein ZK616.4 protein.
          Length = 436

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +1

Query: 346 NLALLTNCQNSLKPEVLATPTQALDKKGCHHTGTVLSCVYT 468
           N AL T C  ++K  V A PTQA  K G    G++L  + T
Sbjct: 372 NYALATKCPPTIKLRVFAAPTQAERKYGAWIGGSILGSLGT 412


>AC024818-4|AAF60782.5|  457|Caenorhabditis elegans Hypothetical
           protein Y54H5A.4 protein.
          Length = 457

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -3

Query: 497 INSSFTKSF---LVYTQLSTVPVW*HPFLSSAWVG 402
           I+SSF + F   L+Y +LST P    P LSSA  G
Sbjct: 144 IDSSFARKFAHSLIYEELSTTPSTSRPLLSSACPG 178


>Z82055-1|CAB04843.1|  405|Caenorhabditis elegans Hypothetical
           protein T26H2.1 protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 298 TIKYDVKNLEQVFYLTNL-ALLTNCQNSLKPEVLATPTQ 411
           TI  +  N  QV++  N+ AL + CQNS+ P  L  P +
Sbjct: 82  TISMNFDNSFQVYFYLNIDALESTCQNSIVPLKLGIPNR 120


>AF078789-3|AAK68487.1|  295|Caenorhabditis elegans Hypothetical
           protein Y44E3B.1b protein.
          Length = 295

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +1

Query: 184 QTILKDNLKSKDVGTLYYAVRGLKQLKADVPNICEDLKTIKYDVK 318
           +T L DN +S D    YY  +  K+  A VPN     K  KY++K
Sbjct: 179 ETSLSDNDESVDDS--YYKPKSSKKTAAAVPNFVPKTKARKYNLK 221


>AF078789-2|AAK21516.1|  318|Caenorhabditis elegans Hypothetical
           protein Y44E3B.1a protein.
          Length = 318

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +1

Query: 184 QTILKDNLKSKDVGTLYYAVRGLKQLKADVPNICEDLKTIKYDVK 318
           +T L DN +S D    YY  +  K+  A VPN     K  KY++K
Sbjct: 179 ETSLSDNDESVDDS--YYKPKSSKKTAAAVPNFVPKTKARKYNLK 221


>AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical
           protein F56D12.6b protein.
          Length = 951

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/86 (17%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
 Frame = +1

Query: 79  KTYMKMYFRVQLLILVSIAVSNANILQGTVDINRLQTILKDNLKSKDVGTLYYAVRGLKQ 258
           K  M++   + ++++ ++   +  +L+   D+NR +  LK    ++ V  +      L++
Sbjct: 63  KGTMELMAEIHVMLVKNLQDLSREVLKYKEDVNRTRKELKQPQVAEAVNLMQTTTTCLQK 122

Query: 259 LKADVPNICEDLKTIKYDVK-NLEQV 333
            K    + C++L+ +K +   N++++
Sbjct: 123 AKETYQHRCQELEKVKKETNVNVKEI 148


>AF016672-4|AAD47126.1|  968|Caenorhabditis elegans Hypothetical
           protein F56D12.6a protein.
          Length = 968

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/86 (17%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
 Frame = +1

Query: 79  KTYMKMYFRVQLLILVSIAVSNANILQGTVDINRLQTILKDNLKSKDVGTLYYAVRGLKQ 258
           K  M++   + ++++ ++   +  +L+   D+NR +  LK    ++ V  +      L++
Sbjct: 80  KGTMELMAEIHVMLVKNLQDLSREVLKYKEDVNRTRKELKQPQVAEAVNLMQTTTTCLQK 139

Query: 259 LKADVPNICEDLKTIKYDVK-NLEQV 333
            K    + C++L+ +K +   N++++
Sbjct: 140 AKETYQHRCQELEKVKKETNVNVKEI 165


>U58762-5|AAK39304.2|  496|Caenorhabditis elegans Hypothetical
           protein T27F7.3a protein.
          Length = 496

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 190 WFEGD*YPQCLGECWHYLLLYSLR 119
           WFE + + QC+ + WH + L S R
Sbjct: 460 WFESNGWYQCIEKIWHSIALTSSR 483


>AJ431373-1|CAD24083.1|  496|Caenorhabditis elegans putative alpha 2
           mannosyltransferaseprotein.
          Length = 496

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 190 WFEGD*YPQCLGECWHYLLLYSLR 119
           WFE + + QC+ + WH + L S R
Sbjct: 460 WFESNGWYQCIEKIWHSIALTSSR 483


>AF077531-5|AAC64615.1|  219|Caenorhabditis elegans Hypothetical
           protein F13C5.5 protein.
          Length = 219

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
 Frame = +1

Query: 151 ILQGTVDINRLQTILKDNLKSKDVGTLYYAVRGLKQL-KADVPNI--CEDLKTIKYDVKN 321
           IL+   + + L   ++D + ++ + T   A+  L Q+   DV  I   E+L  ++++  N
Sbjct: 121 ILKKDTNSSALPFAIEDLIDAESIATRMKAMGHLSQIANLDVDTIEYTEELVDLEFEPSN 180

Query: 322 LEQVFYLTNLALL 360
           LE +F    LAL+
Sbjct: 181 LELIFKAILLALI 193


>AC006807-4|AAK84618.1|  904|Caenorhabditis elegans Hypothetical
           protein Y58A7A.4 protein.
          Length = 904

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = +1

Query: 199 DNLKSKDVGTLYYAVRGLKQLKADVPNICEDLKTIKYDVKNLEQVFYLTNLALLTNCQNS 378
           DN     V T+Y  +R +  +K  V  IC   + ++ D+K L   F      L+ N    
Sbjct: 761 DNGPYCPVATVYTDIRLIPAIKDSVMRICARTRDLRLDIK-LRNRFLKAEQLLIKN--GI 817

Query: 379 LKPEVL 396
           LK E+L
Sbjct: 818 LKTEIL 823


>U39471-1|AAA80132.4|  461|Caenorhabditis elegans Intestinal acid
           phosphatase protein4 protein.
          Length = 461

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 88  MKMYFRVQLLILVSIAVSNANILQGTVDINRLQTI 192
           MK+      + LV + VSNA+++ GT+ +  +Q I
Sbjct: 1   MKLLIYSIPIFLVQLVVSNADVMNGTMKLMMVQAI 35


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,172,875
Number of Sequences: 27780
Number of extensions: 231068
Number of successful extensions: 489
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)