Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15b02
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    27   0.14 
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    24   1.0  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   2.3  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   4.1  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   4.1  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   5.4  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   7.1  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 26.6 bits (56), Expect = 0.14
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 187  FEGD*YPQCLGECWHYLL 134
            F+G  YP  LG CWH ++
Sbjct: 1454 FDGKDYPLRLGPCWHAVM 1471


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 12/50 (24%), Positives = 20/50 (40%)
 Frame = +1

Query: 136 VSNANILQGTVDINRLQTILKDNLKSKDVGTLYYAVRGLKQLKADVPNIC 285
           +SN N L    + N       +N  +      YY +  ++Q+   VP  C
Sbjct: 82  ISNNNSLSNNYNYNNNYNNYNNNYNTNYKKLQYYNIINIEQIPVPVPIYC 131


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 462 YTAKYSSCMVTSFFV*CLGWSRQYF 388
           Y A   SC +  +++  L W+  YF
Sbjct: 64  YAAAVMSCWMNVYYIVILAWAIFYF 88


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +3

Query: 33  NTYKFLTLVTSNKYN*NLYEN 95
           N YK+      N YN N Y N
Sbjct: 320 NNYKYSNYNNYNNYNNNNYNN 340


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 250 LKQLKADVPNICEDLKTIKYDVKNLEQVFYLTNLALL 360
           L  L+ D+ N  + LK I++  KNL  +  L N A +
Sbjct: 58  LVPLQCDLSNQNDILKVIEWVEKNLGAIDILINNATI 94


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -2

Query: 354 GQVCEV-KHLL*V-LDIILYRFEVLTNIWHISFQLFQSSNSIIQGA 223
           GQ+ EV +H     L I L R E+L +  H++F+L   + +  Q +
Sbjct: 146 GQIREVARHFYHKELQIELVREEILFDTVHVTFKLTFDNRAFTQAS 191


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 331 LALSS*HHTLSF*GPHKYLAHQLSTVSILEQHNTG 227
           +ALS   H L +  P     + ++T S+++  N G
Sbjct: 255 MALSPVTHNLYYNSPSSENLYYVNTESLMKSENQG 289


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,575
Number of Sequences: 438
Number of extensions: 2806
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)