Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15a24
(428 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal prote... 183 6e-47
Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical pr... 33 0.066
Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical pr... 33 0.066
Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical pr... 33 0.066
Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical pr... 29 1.4
U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein. 29 1.4
Z92775-2|CAB07162.2| 382|Caenorhabditis elegans Hypothetical pr... 27 4.3
Z92775-1|CAB07161.2| 379|Caenorhabditis elegans Hypothetical pr... 27 4.3
AF026206-4|AAK39309.1| 535|Caenorhabditis elegans Hypothetical ... 27 4.3
AF026206-3|AAK39308.1| 518|Caenorhabditis elegans Hypothetical ... 27 4.3
AF026206-2|AAT92054.1| 552|Caenorhabditis elegans Hypothetical ... 27 4.3
U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p... 27 7.5
Z81514-5|CAB04192.2| 611|Caenorhabditis elegans Hypothetical pr... 26 10.0
U80837-7|AAB37907.1| 760|Caenorhabditis elegans Hypothetical pr... 26 10.0
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 26 10.0
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr... 26 10.0
AF099920-7|AAK29842.2| 336|Caenorhabditis elegans Hypothetical ... 26 10.0
AF099920-6|AAQ01531.1| 388|Caenorhabditis elegans Hypothetical ... 26 10.0
AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical... 26 10.0
>L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 21 protein.
Length = 161
Score = 183 bits (445), Expect = 6e-47
Identities = 85/126 (67%), Positives = 99/126 (78%)
Frame = +2
Query: 44 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 223
MTNSKG RRGTR +FAR FR HG LSTY YK GD+VDI+ NGA QKGMP K YHG+
Sbjct: 1 MTNSKGLRRGTRYMFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGR 60
Query: 224 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 403
TGR++NVT A+G+IVNKRVRG I+PKRINIR+EH+K SKCR DFL RVK N+ K AK
Sbjct: 61 TGRIFNVTRGAVGIIVNKRVRGNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAK 120
Query: 404 AAGKTV 421
+AG+ V
Sbjct: 121 SAGQPV 126
>Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical
protein W06F12.2c protein.
Length = 502
Score = 33.5 bits (73), Expect = 0.066
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -3
Query: 228 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 91
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271
>Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical
protein W06F12.2b protein.
Length = 568
Score = 33.5 bits (73), Expect = 0.066
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -3
Query: 228 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 91
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271
>Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical
protein W06F12.2a protein.
Length = 562
Score = 33.5 bits (73), Expect = 0.066
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -3
Query: 228 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 91
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 220 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 265
>Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical
protein E02H4.1 protein.
Length = 664
Score = 29.1 bits (62), Expect = 1.4
Identities = 11/44 (25%), Positives = 20/44 (45%)
Frame = +1
Query: 178 WCSSKGYATQSIPWKDRSRVQRYCSRSRCDCQQACSRKDYTETH 309
WC S T + + +++ ++ C C Q C + YT T+
Sbjct: 503 WCDSTNTTTLNCLTTEGAKLSTKENQKHCKCIQPCQQDQYTTTY 546
>U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein.
Length = 664
Score = 29.1 bits (62), Expect = 1.4
Identities = 11/44 (25%), Positives = 20/44 (45%)
Frame = +1
Query: 178 WCSSKGYATQSIPWKDRSRVQRYCSRSRCDCQQACSRKDYTETH 309
WC S T + + +++ ++ C C Q C + YT T+
Sbjct: 503 WCDSTNTTTLNCLTTEGAKLSTKENQKHCKCIQPCQQDQYTTTY 546
>Z92775-2|CAB07162.2| 382|Caenorhabditis elegans Hypothetical
protein C06H5.2 protein.
Length = 382
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -2
Query: 382 LILFDSLKEVLSALGVL 332
LILFD+LK VL ++GVL
Sbjct: 200 LILFDALKNVLQSVGVL 216
>Z92775-1|CAB07161.2| 379|Caenorhabditis elegans Hypothetical
protein C06H5.1 protein.
Length = 379
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -2
Query: 382 LILFDSLKEVLSALGVL 332
LILFD+LK VL ++GVL
Sbjct: 200 LILFDALKNVLQSVGVL 216
>AF026206-4|AAK39309.1| 535|Caenorhabditis elegans Hypothetical
protein T28B4.1a protein.
Length = 535
Score = 27.5 bits (58), Expect = 4.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 277 LVDNHTESVSSNVVHATCLSMVY 209
+ D H +++SSN H CL + Y
Sbjct: 246 ITDEHVDAISSNCAHLECLCVNY 268
>AF026206-3|AAK39308.1| 518|Caenorhabditis elegans Hypothetical
protein T28B4.1b protein.
Length = 518
Score = 27.5 bits (58), Expect = 4.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 277 LVDNHTESVSSNVVHATCLSMVY 209
+ D H +++SSN H CL + Y
Sbjct: 229 ITDEHVDAISSNCAHLECLCVNY 251
>AF026206-2|AAT92054.1| 552|Caenorhabditis elegans Hypothetical
protein T28B4.1c protein.
Length = 552
Score = 27.5 bits (58), Expect = 4.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 277 LVDNHTESVSSNVVHATCLSMVY 209
+ D H +++SSN H CL + Y
Sbjct: 263 ITDEHVDAISSNCAHLECLCVNY 285
>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
protein F47C12.1 protein.
Length = 1827
Score = 26.6 bits (56), Expect = 7.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 256 SRCDCQQACSRKDYTETHQYPC*AC 330
S +C+QAC Y+ + PC AC
Sbjct: 1610 SASECKQACKTGTYSNSGLEPCSAC 1634
>Z81514-5|CAB04192.2| 611|Caenorhabditis elegans Hypothetical
protein F26F2.6 protein.
Length = 611
Score = 26.2 bits (55), Expect = 10.0
Identities = 9/36 (25%), Positives = 18/36 (50%)
Frame = +1
Query: 46 DELQGLPPRHQGLVRSQVPHTWNYPALHVHESVQSW 153
++++ P H G+++ TW P L + +S W
Sbjct: 357 EDIKMTPRFHVGIIKKDDTWTWRLPQLKIDQSPIPW 392
>U80837-7|AAB37907.1| 760|Caenorhabditis elegans Hypothetical
protein F07E5.8 protein.
Length = 760
Score = 26.2 bits (55), Expect = 10.0
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -2
Query: 373 FDSL-KEVLSALGVLDMLNTDIDAFRYNP 290
FDSL K+ A G + +N+DI F Y P
Sbjct: 330 FDSLIKKTTKACGSIRYVNSDIPNFEYKP 358
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 244 YCSRSRCDCQQACSRKDYTETHQ 312
YC+R RC+C S D HQ
Sbjct: 618 YCARGRCECPPRMSAIDKKCVHQ 640
>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical
protein F48E3.8b protein.
Length = 1299
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 244 YCSRSRCDCQQACSRKDYTETHQ 312
YC+R RC+C S D HQ
Sbjct: 618 YCARGRCECPPRMSAIDKKCVHQ 640
>AF099920-7|AAK29842.2| 336|Caenorhabditis elegans Hypothetical
protein H06H21.8a protein.
Length = 336
Score = 26.2 bits (55), Expect = 10.0
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 62 YRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVY 214
Y +LF + F +G+IP + KVY DI G V + + KV+
Sbjct: 90 YYSKKENLFYKHFE-YGSIPNFPFPKVYFTEDINGEATGGIVAENLSEKVF 139
>AF099920-6|AAQ01531.1| 388|Caenorhabditis elegans Hypothetical
protein H06H21.8b protein.
Length = 388
Score = 26.2 bits (55), Expect = 10.0
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 62 YRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVY 214
Y +LF + F +G+IP + KVY DI G V + + KV+
Sbjct: 90 YYSKKENLFYKHFE-YGSIPNFPFPKVYFTEDINGEATGGIVAENLSEKVF 139
>AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical
protein Y73B6BL.1 protein.
Length = 751
Score = 26.2 bits (55), Expect = 10.0
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +1
Query: 145 QSWRHCRHQRQWCSSKGYATQSIPWKDRSRV 237
Q RHC Q C S Y W+ RSRV
Sbjct: 366 QPVRHCSEQDATCDSPFYWCDMKLWRCRSRV 396
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,447,227
Number of Sequences: 27780
Number of extensions: 195555
Number of successful extensions: 714
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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