Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15a24
(428 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 25 0.27
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 24 0.83
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 24 0.83
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 24 0.83
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 24 0.83
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 22 3.3
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 21 4.4
DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor pr... 21 4.4
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 4.4
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 21 7.7
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 21 7.7
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 21 7.7
AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex det... 21 7.7
>AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1
protein.
Length = 500
Score = 25.4 bits (53), Expect = 0.27
Identities = 10/52 (19%), Positives = 19/52 (36%)
Frame = -2
Query: 235 HATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERDSSMCAEPASEQV 80
H L V + CT+ + + + H++ DSS+ P +
Sbjct: 245 HVLKLHQVAHYGEKVYKCTLCHETFGSKKTMELHIKTHSDSSVVGSPRDSPI 296
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 23.8 bits (49), Expect = 0.83
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 163 RHQRQWCSSKGYATQSIPWKDRSRVQRYCSRSR 261
R Q+ + + Y WK+RSR + RSR
Sbjct: 45 REQKSYKNENSYRKYRETWKERSRDRTERERSR 77
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 23.8 bits (49), Expect = 0.83
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 163 RHQRQWCSSKGYATQSIPWKDRSRVQRYCSRSR 261
R Q+ + + Y WK+RSR + RSR
Sbjct: 45 REQKSYKNENSYRKYRETWKERSRDRTERERSR 77
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 23.8 bits (49), Expect = 0.83
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 163 RHQRQWCSSKGYATQSIPWKDRSRVQRYCSRSR 261
R Q+ + + Y WK+RSR + RSR
Sbjct: 45 REQKSYKNENSYRKYRETWKERSRDRTERERSR 77
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 23.8 bits (49), Expect = 0.83
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 163 RHQRQWCSSKGYATQSIPWKDRSRVQRYCSRSR 261
R Q+ + + Y WK+RSR + RSR
Sbjct: 45 REQKSYKNENSYRKYRETWKERSRDRTERERSR 77
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 21.8 bits (44), Expect = 3.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 124 ERDSSMCAEPASEQVPGAAAVTL 56
ERD+S+ + + PGA A T+
Sbjct: 636 ERDASLSSTHSHPHEPGAPATTI 658
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 21.4 bits (43), Expect = 4.4
Identities = 10/51 (19%), Positives = 22/51 (43%)
Frame = +1
Query: 85 VRSQVPHTWNYPALHVHESVQSWRHCRHQRQWCSSKGYATQSIPWKDRSRV 237
+R +P N+P ++HE + + + + K Y+ + SR+
Sbjct: 446 IRRYLPVLKNFPTRYIHEPWNAPLNVQRAAKCIIGKDYSLPMVNHSKSSRI 496
>DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor
protein.
Length = 459
Score = 21.4 bits (43), Expect = 4.4
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = -2
Query: 169 DVYNVSNFVHFHVRGERDSSMCAEPASEQVPGAAAVT 59
++YN S+ + ++RGE S+ + VP +T
Sbjct: 376 NIYNASSRMENNLRGETQSNYREMEKRQSVPANDLLT 412
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.4 bits (43), Expect = 4.4
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 172 RQWCSSKGYATQSIPWKDRSRV 237
R C GY +SI W+ +RV
Sbjct: 509 RVTCPVAGYPIESIVWERDTRV 530
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 20.6 bits (41), Expect = 7.7
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = -2
Query: 202 WHTLLNCTIASDVYNV 155
WHT+ NC + V+ +
Sbjct: 236 WHTVGNCDGLTSVFRI 251
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 20.6 bits (41), Expect = 7.7
Identities = 6/9 (66%), Positives = 6/9 (66%)
Frame = -1
Query: 80 PWCRGGNPW 54
PW GNPW
Sbjct: 135 PWRTCGNPW 143
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 20.6 bits (41), Expect = 7.7
Identities = 6/9 (66%), Positives = 6/9 (66%)
Frame = -1
Query: 80 PWCRGGNPW 54
PW GNPW
Sbjct: 188 PWRTCGNPW 196
>AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex
determiner protein.
Length = 385
Score = 20.6 bits (41), Expect = 7.7
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 163 RHQRQWCSSKGYATQSIPWKDRSRVQRYCSRSR 261
R Q+ + + Y K+RSR +R RSR
Sbjct: 278 REQKSYKNENSYRKYRETSKERSRDRRERGRSR 310
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,541
Number of Sequences: 438
Number of extensions: 2264
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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