Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15a23
         (482 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...   117   1e-27
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    29   0.28 
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   2.0  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    27   2.0  
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce...    27   2.0  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    26   3.4  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    25   4.5  
SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|c...    25   7.9  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score =  117 bits (281), Expect = 1e-27
 Identities = 61/136 (44%), Positives = 90/136 (66%), Gaps = 1/136 (0%)
 Frame = +3

Query: 78  MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQ-GDIQIEGFNPSAEEADEGTD 254
           M +YKD+I+GDE+ SD Y +K VD+++YE   ++VT  Q GD+ I G NPSAE+A+E  +
Sbjct: 1   MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANPSAEDAEENAE 59

Query: 255 SAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKV 434
              E+  ++V + RL  T +F DKKSY  Y+K YMK + A+L+E  P++V VF+ N    
Sbjct: 60  EGTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGF 117

Query: 435 MKDILGRFKELQFFTG 482
           +K IL  FK+  F+ G
Sbjct: 118 VKKILANFKDYDFYIG 133


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 29.5 bits (63), Expect = 0.28
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +3

Query: 273 VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKT 419
           +D V  ++L+E   F ++K  T+YLK   + L  K +   PD VE   T
Sbjct: 89  IDEVSLNKLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVEDLMT 135


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 115  ISSPVIMSL*IFILMDWRRLKII 47
            ISSP I  + IFILM+  RL +I
Sbjct: 1220 ISSPTIFVINIFILMNQERLNLI 1242


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 137 HFVSVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGF 27
           +F  + + L T +  LI   +  +E+IK  KNR +GF
Sbjct: 503 YFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGF 539


>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 180 VTRAQGDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGD 323
           +T   G  Q + F PS  E +E TD+ ++  V  ++    V    F D
Sbjct: 6   LTEVWGKPQKDIFFPSGSEVEESTDAPIQRTVQPIVTGSSVLALKFAD 53


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 293 VVQDYVNSALDGRVRALVSLFSRRIKTLDLDIT 195
           V++D +NS LDG +  +    S R +T  LD++
Sbjct: 341 VLEDQMNSLLDGSLYGICRPLSSRAQTSVLDLS 373


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 473 ELKFLKPAEDVFHYFVHVCFKYFNLVR 393
           +  FLKP   ++ YF+ +  +Y +L+R
Sbjct: 175 QFDFLKPNNALYPYFMRIVQQYTSLIR 201


>SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 186

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -2

Query: 466 SSLNLPRMSFITLFMFVLNTS 404
           +SLN PR+  +T++ F+  T+
Sbjct: 77  NSLNFPRIEGLTIYKFIFKTA 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,862,282
Number of Sequences: 5004
Number of extensions: 36393
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)