Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15a23
         (482 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   3.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   3.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   4.0  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   5.2  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   9.1  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   9.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.1  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   9.1  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 481 PVKN*SSLNLPRMSFITLFMFVLNTSTWSGAFS 383
           PV+   +L+LPR +    F    N+ T +G +S
Sbjct: 197 PVQVVKNLHLPRFTLEKFFTDYCNSKTNTGEYS 229


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 481 PVKN*SSLNLPRMSFITLFMFVLNTSTWSGAFS 383
           PV+   +L+LPR +    F    N+ T +G +S
Sbjct: 197 PVQVVKNLHLPRFTLEKFFTDYCNSKTNTGEYS 229


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = -2

Query: 142 NFIL*VSENISSPVIMSL*IFILMDWRRLKIIKTE 38
           +F+L VS  I++ V  +  IF+ + W + ++++ +
Sbjct: 230 SFLLYVSGFITTEVAGTYAIFLYISWHQKELVRRD 264


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 12/39 (30%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = +3

Query: 237 ADEGTDSAVESG-VDIVLNHRLVETYAFGDKKSYTLYLK 350
           +DE   +A++SG  +  +N+ L++T  +GD K++ + +K
Sbjct: 44  SDEKRQAAIQSGDYNYTMNY-LLDTDQWGD-KTFVIIMK 80


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 119 EHLITSDNVLIDLHFDGLEAIKNNKN 42
           E   TSD    D+H++G++ I + ++
Sbjct: 281 EQFRTSDYQQNDIHYEGVQNILDTQS 306


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 119 EHLITSDNVLIDLHFDGLEAIKNNKN 42
           E   TSD    D+H++G++ I + ++
Sbjct: 281 EQFRTSDYQQNDIHYEGVQNILDTQS 306


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 198  DIQIEGFNPSAEEADEGTDSAVESG 272
            D+++EGF       D  T S  +SG
Sbjct: 1050 DLEVEGFETKLVLEDGITSSGSDSG 1074


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 119 EHLITSDNVLIDLHFDGLEAIKNNKN 42
           E   TSD    D+H++G++ I + ++
Sbjct: 281 EQFRTSDYQQNDIHYEGVQNILDTQS 306


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,632
Number of Sequences: 438
Number of extensions: 2395
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)