Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15a19
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   3.4  
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    26   4.5  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    26   4.5  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   7.9  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   7.9  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   7.9  

>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +3

Query: 363 TLVQFYENCKNVKTRYKIINGRFGKISILSHKPTSKLYLQKTISA--HNFNVDEIKVHQL 536
           +L++ +  C N  +RY        K+S++ H+    L L+  +S    N   ++IK  ++
Sbjct: 656 SLLKLFFKCANEGSRYNASAALSFKLSLMLHEKEEVLLLKTNVSCVLANHGYNDIKFEEM 715

Query: 537 M 539
           +
Sbjct: 716 V 716


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +1

Query: 334 PPPPQMLRCKRWYNFTKTAKTSKLGIK*STGVLAKYLFY 450
           PP   ++    WY+F +      +G+   +G +  Y+FY
Sbjct: 244 PPALFLIFATPWYHFIQLVLPHYIGVAGFSGAILGYVFY 282


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
 Frame = +3

Query: 378 YENCKNVKTRYKIIN--GRFGKISILSHKPTSKL---YLQKTISAHNFNVDEIKVHQLMN 542
           YE+C+  +     ++   + G I + ++K   KL   YL+   +A +      +VHQLM+
Sbjct: 164 YEDCQKFEIDNPSLSPVDKHGAIILRTYKKNKKLLPDYLKSFYNAGSSYFQREQVHQLMD 223

Query: 543 DHPKFYKK 566
               F+ K
Sbjct: 224 GESVFFLK 231


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -1

Query: 303  YNLIYSIIGTIKLMHINFLNASIL-RKRKLSKTAFT 199
            Y+LI  + GT K   I+ L  S+L +K+K+  T+FT
Sbjct: 950  YSLILGMPGTGKTTTISSLIRSLLAKKKKILLTSFT 985


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 334 PPPPQMLRCKRWYNFTKTAK 393
           PP P  LR  RW+   +TAK
Sbjct: 416 PPAPNRLRSLRWHYGIQTAK 435


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 229 EAQIIKDSIYDNTVLLNRDVFLNILKFANDVF 134
           E+ IIK S+  N  L  RD+F  ++K     F
Sbjct: 655 ESPIIKRSLIRNNRLKGRDLFSELVKITESSF 686


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,356,471
Number of Sequences: 5004
Number of extensions: 47103
Number of successful extensions: 166
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)