Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15a19
         (573 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   1.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   1.6  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   2.8  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   3.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   3.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.0  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 236 YCGSANYQRQHLRQHSVAEQR 174
           Y  +ANY   +L +H+V EQR
Sbjct: 198 YLLAANYTGWYLTKHNVPEQR 218


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 236 YCGSANYQRQHLRQHSVAEQR 174
           Y  +ANY   +L +H+V EQR
Sbjct: 198 YLLAANYTGWYLTKHNVPEQR 218


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +3

Query: 372 QFYENCKNVKTRYKIINGRFGKISILSHKPTSKLYLQKTISAHNFNVDEI--KVHQL 536
           +FY N + V   + ++ G    I      P + L +QK I     +V E+  K H +
Sbjct: 128 RFYGNIQTVXNNWLLLEGHSIGIGDTIADPQTYLEIQKXIKKAKEDVIEVIQKAHNM 184


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +3

Query: 378 YENCKNVKTRYKIINGRFGKISIL 449
           YE+C  + + +KI   +F ++ +L
Sbjct: 121 YEDCSGIVSAFKIAVDKFDRLWVL 144


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 326 HGHHHRHKCYAANAGTILRKLQKR 397
           H HH  H     ++G +  + QKR
Sbjct: 280 HVHHANHHAILGHSGFLCERHQKR 303


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +3

Query: 300 CTDSYLRFVMXXXXXXXXXLQTLVQFYENCKNVKTRYKIING 425
           CTDS +             L+ L    E+ K++ TR+   NG
Sbjct: 192 CTDSDIEKYKMFCNLENVKLKELRIILEDIKHINTRHNTKNG 233


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,344
Number of Sequences: 438
Number of extensions: 3625
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)