Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15a16
         (575 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06323-1|CAA29639.1|  348|Homo sapiens protein ( Human MRL3 mRNA...    77   3e-14
CR456720-1|CAG33001.1|  348|Homo sapiens MRPL3 protein.                77   3e-14
BC003375-1|AAH03375.1|  348|Homo sapiens mitochondrial ribosomal...    77   3e-14
AB019530-1|BAA76637.1|  275|Homo sapiens OGG1 protein type 2d pr...    29   8.9  

>X06323-1|CAA29639.1|  348|Homo sapiens protein ( Human MRL3 mRNA
           for ribosomal protein L3 homologue ( MRL3 =  mammalian
           ribosome L3 ).  ).
          Length = 348

 Score = 77.4 bits (182), Expect = 3e-14
 Identities = 40/97 (41%), Positives = 59/97 (60%)
 Frame = +1

Query: 256 KERVWTDDYLTKENKQFLEEVIKDKLEAQTALEKKALTSPILNDVKKNVTWTPQTKRVGL 435
           K   W D++L++EN  F+++++ D+ +AQ A +      P+ ++      W P + RVGL
Sbjct: 44  KSGTWWDEHLSEENVPFIKQLVSDEDKAQLASK----LCPLKDEPWPIHPWEPGSFRVGL 99

Query: 436 IARKIGNYPLWCKDGKKVSTTLLQVVDNHVIKYIPPE 546
           IA K+G  PLW KDG+K   TLLQV D HV+KY   E
Sbjct: 100 IALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKE 136


>CR456720-1|CAG33001.1|  348|Homo sapiens MRPL3 protein.
          Length = 348

 Score = 77.4 bits (182), Expect = 3e-14
 Identities = 40/97 (41%), Positives = 59/97 (60%)
 Frame = +1

Query: 256 KERVWTDDYLTKENKQFLEEVIKDKLEAQTALEKKALTSPILNDVKKNVTWTPQTKRVGL 435
           K   W D++L++EN  F+++++ D+ +AQ A +      P+ ++      W P + RVGL
Sbjct: 44  KSGTWWDEHLSEENVPFIKQLVSDEDKAQLASK----LCPLKDEPWPIHPWEPGSFRVGL 99

Query: 436 IARKIGNYPLWCKDGKKVSTTLLQVVDNHVIKYIPPE 546
           IA K+G  PLW KDG+K   TLLQV D HV+KY   E
Sbjct: 100 IALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKE 136


>BC003375-1|AAH03375.1|  348|Homo sapiens mitochondrial ribosomal
           protein L3 protein.
          Length = 348

 Score = 77.4 bits (182), Expect = 3e-14
 Identities = 40/97 (41%), Positives = 59/97 (60%)
 Frame = +1

Query: 256 KERVWTDDYLTKENKQFLEEVIKDKLEAQTALEKKALTSPILNDVKKNVTWTPQTKRVGL 435
           K   W D++L++EN  F+++++ D+ +AQ A +      P+ ++      W P + RVGL
Sbjct: 44  KSGTWWDEHLSEENVPFIKQLVSDEDKAQLASK----LCPLKDEPWPIHPWEPGSFRVGL 99

Query: 436 IARKIGNYPLWCKDGKKVSTTLLQVVDNHVIKYIPPE 546
           IA K+G  PLW KDG+K   TLLQV D HV+KY   E
Sbjct: 100 IALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKE 136


>AB019530-1|BAA76637.1|  275|Homo sapiens OGG1 protein type 2d
           protein.
          Length = 275

 Score = 29.5 bits (63), Expect = 8.9
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 409 TPQT-KRVGLIARKI-GNYPLWCKDGKKVSTTLLQVVDNHVIKYIPPEEYXT 558
           +PQT K +G   R + G Y  W +   +V TT +  +  H +  +PPEE  T
Sbjct: 211 SPQTNKELGNFFRSLWGPYAGWAQALCQVITTFMTFLGPHRLDQMPPEELQT 262


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,388,441
Number of Sequences: 237096
Number of extensions: 1562492
Number of successful extensions: 3304
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3301
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5929224630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)