Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15a16
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   2.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   2.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.0  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    22   5.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   6.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   6.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.7  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 366 DLSHFKRCQKKCNMDSSNKKSGTYCTKDRKLSI 464
           DLS+  R +K C +D   +    YC   + L++
Sbjct: 141 DLSYACREEKSCIIDKRQRNRCQYCRYQKCLAM 173


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 366 DLSHFKRCQKKCNMDSSNKKSGTYCTKDRKLSI 464
           DLS+  R +K C +D   +    YC   + L++
Sbjct: 141 DLSYACREEKSCIIDKRQRNRCQYCRYQKCLAM 173


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +1

Query: 247 YVPKERVWTDDYLTKEN 297
           YVP E +W  D +   N
Sbjct: 96  YVPSEHIWLPDIVLYNN 112


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +1

Query: 247 YVPKERVWTDDYLTKEN 297
           YVP E +W  D +   N
Sbjct: 109 YVPSENIWLPDIVLYNN 125


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 238 PYWYVPKERVWTDDYLTK 291
           P   + + R+W DD LTK
Sbjct: 104 PLEKLKERRIWRDDALTK 121


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 191 ALSNLDFCKAPHNNFKLFGNI 129
           A+S+L  CK  H+N  + G +
Sbjct: 219 AMSDLVICKLSHSNASVAGGM 239


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 191 ALSNLDFCKAPHNNFKLFGNI 129
           A+S+L  CK  H+N  + G +
Sbjct: 219 AMSDLVICKLSHSNASVAGGM 239


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 343 SVPQVYPLSLPPRI 302
           SV QVYP +L PR+
Sbjct: 37  SVHQVYPENLIPRL 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,033
Number of Sequences: 438
Number of extensions: 3618
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)