Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15a15
(455 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 27 1.8
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 26 2.4
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 2.4
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 5.5
SPCC16C4.20c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 7.3
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 25 7.3
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 24 9.6
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 26.6 bits (56), Expect = 1.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 198 SSLQHSAAAIYSASVLESATTDCFLELHAIGPPFI 302
SSL + A I+S S A + F+ LH +G P +
Sbjct: 791 SSLDWNFAFIHSKSAENQAISAIFMFLHTVGAPIL 825
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 26.2 bits (55), Expect = 2.4
Identities = 19/82 (23%), Positives = 32/82 (39%)
Frame = +3
Query: 54 VINQFSQRKQLLYAIIIVKITTKCFNVHESSKVFYFSVYNLERSLIYSSSLQHSAAAIYS 233
++ + +++LLY +I I T C ++ Y + E +SS + S
Sbjct: 716 MLENCASKEELLYVCLIYTIWTHCTDMDSMDNCVYLCIQKFESYGWGASSEMECYFSYCS 775
Query: 234 ASVLESATTDCFLELHAIGPPF 299
ATT F L + P F
Sbjct: 776 LIFYYQATTLQFYNLPKVRPFF 797
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 2.4
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +3
Query: 132 VHESSKVFYFSVYNLERSLIYSSSLQHSAAAIYSASVLESAT 257
V+ S+ + SV N + I SSS+ +S+ I S+SVL S+T
Sbjct: 3438 VNSSTPITSSSVLN-SSTAIASSSILNSSTPITSSSVLNSST 3478
Score = 25.4 bits (53), Expect = 4.2
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +3
Query: 117 TKCFNVHESSKVFYFSVYNLERSLIYSSSLQHSAAAIYSASVLESAT 257
T ++ S+ + SV N + I SSS+ +S+ I S+SVL S+T
Sbjct: 3157 TSSTTLNTSTPITSSSVLN-SSTAITSSSIVNSSTPITSSSVLNSST 3202
Score = 25.0 bits (52), Expect = 5.5
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +3
Query: 117 TKCFNVHESSKVFYFSVYNLERSLIYSSSLQHSAAAIYSASVLESAT 257
T ++ S+ + SV N + I SSS+ +S+ I S+SVL S+T
Sbjct: 3205 TSSTTLNTSTPITSSSVLN-SSTAITSSSVLNSSTPITSSSVLNSST 3250
Score = 24.6 bits (51), Expect = 7.3
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +3
Query: 132 VHESSKVFYFSVYNLERSLIYSSSLQHSAAAIYSASVLESAT 257
++ S+ + +V N S I SSS+ +S+ I S+SVL S+T
Sbjct: 2406 LNSSTPITSSTVVNTSTS-ITSSSVLNSSTPITSSSVLNSST 2446
Score = 24.6 bits (51), Expect = 7.3
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +3
Query: 132 VHESSKVFYFSVYNLERSLIYSSSLQHSAAAIYSASVLESAT 257
++ S+ + SV N + I SSS+ +S+ I S+SVL S+T
Sbjct: 3078 LNTSTPITSSSVLN-SSTAITSSSIVNSSTPITSSSVLNSST 3118
Score = 24.2 bits (50), Expect = 9.6
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +3
Query: 132 VHESSKVFYFSVYNLERSLIYSSSLQHSAAAIYSASVLESAT 257
V+ S+ + SV N + I SSS+ +++ I S+SVL S+T
Sbjct: 378 VNSSTPITSSSVLN-SSTPITSSSILNTSTPITSSSVLNSST 418
Score = 24.2 bits (50), Expect = 9.6
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +3
Query: 132 VHESSKVFYFSVYNLERSLIYSSSLQHSAAAIYSASVLESAT 257
++ S+ + SV N + I SSS+ +S+ + S+SVL S+T
Sbjct: 3330 LNTSTPITSSSVLN-SSTAITSSSILNSSTPVTSSSVLNSST 3370
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.0 bits (52), Expect = 5.5
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 268 FLSSMQLVHHSSRSQNQKYFVSCQDHQRNQNH 363
+L + Q HHS +S + S + H++ NH
Sbjct: 87 YLETFQSKHHSPQSFSASVITSMEIHEQLANH 118
>SPCC16C4.20c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 77
Score = 24.6 bits (51), Expect = 7.3
Identities = 9/45 (20%), Positives = 23/45 (51%)
Frame = +3
Query: 54 VINQFSQRKQLLYAIIIVKITTKCFNVHESSKVFYFSVYNLERSL 188
V+N + ++ +Y +I K + + +++ +YN+ER +
Sbjct: 5 VVNLLQETEEDVYRRKTARIRRKVSEIEKECEMYAVKIYNVERDI 49
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 24.6 bits (51), Expect = 7.3
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = +3
Query: 225 IYSASVLESATTDCFLELHAIGPPFIQITKPEVLRLVSGSPAKSESQK 368
I S SV+ SA TD PPF+ TKP V + A SE+ K
Sbjct: 658 ISSRSVI-SAATDSKPSTRT-SPPFVNNTKPIVAKSPVTVTASSETNK 703
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 24.2 bits (50), Expect = 9.6
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 162 SVYNLERSLIYSSSLQHSAAAIYSASVLESATTDCFLEL 278
SV+ L +L +SSS+ + Y+ SV+ FLEL
Sbjct: 503 SVHQLREALNHSSSVTKEVLSQYTPSVVIGVLKLYFLEL 541
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,622,257
Number of Sequences: 5004
Number of extensions: 29368
Number of successful extensions: 105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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