Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15a15
         (455 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0338 - 28084169-28084366,28084414-28085225,28085565-280855...    72   3e-13
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810...    69   1e-12
04_03_0631 - 18190195-18190686,18190866-18191066                       69   2e-12
04_01_0630 - 8354628-8355803,8355837-8355926                           68   4e-12
07_03_0346 - 17010472-17010843                                         48   5e-06
09_02_0336 - 7397745-7398308,7398813-7400723                           46   1e-05
04_01_0468 + 6032467-6033670,6033858-6033964,6034122-6034178           30   0.77 
01_01_0628 - 4731052-4731601,4731825-4732782,4733143-4733953,473...    29   1.3  
01_06_0227 - 27686525-27686607,27686731-27686803,27687027-276873...    28   3.1  

>02_05_0338 - 28084169-28084366,28084414-28085225,28085565-28085595,
            28085638-28086214,28086439-28087145,28087188-28087228,
            28087253-28087366,28087517-28088108
          Length = 1023

 Score = 71.7 bits (168), Expect = 3e-13
 Identities = 31/89 (34%), Positives = 55/89 (61%)
 Frame = -2

Query: 445  KNILRFIKSSKEKGIHYSKGDNILRGFCDSDFAGDPDTRRSTSGFVIWMNGGPIAWSSRK 266
            + ++R++K + E G+HY+    +L G+ DS++  D D  ++TSG+V  + GG ++W S K
Sbjct: 848  ERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCK 907

Query: 265  QSVVALSSTEAEYIAAAECCKELLYIRDL 179
            Q+++  S+ EAE  A      E  ++RDL
Sbjct: 908  QTILTRSTMEAELTALDTATVEAEWLRDL 936


>01_05_0320 - 20874691-20875230,20879337-20879590,20880014-20881087,
            20881259-20881511,20881548-20882369
          Length = 980

 Score = 69.3 bits (162), Expect = 1e-12
 Identities = 29/89 (32%), Positives = 53/89 (59%)
 Frame = -2

Query: 445  KNILRFIKSSKEKGIHYSKGDNILRGFCDSDFAGDPDTRRSTSGFVIWMNGGPIAWSSRK 266
            + ++R++K +   GIHY+    +L G+ DS++  D D  ++TSG+   + GG ++W S K
Sbjct: 804  ERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYAFTLGGGAVSWKSCK 863

Query: 265  QSVVALSSTEAEYIAAAECCKELLYIRDL 179
            Q+++  S+ EAE  A      E  ++R+L
Sbjct: 864  QTILTRSTMEAELTALDTATVEAEWLREL 892


>04_03_0631 - 18190195-18190686,18190866-18191066
          Length = 230

 Score = 68.5 bits (160), Expect = 2e-12
 Identities = 29/70 (41%), Positives = 48/70 (68%)
 Frame = -2

Query: 376 LRGFCDSDFAGDPDTRRSTSGFVIWMNGGPIAWSSRKQSVVALSSTEAEYIAAAECCKEL 197
           L G+ DSD+AG    R+ST+G   ++    ++WS +KQ+ +ALS+ EAEY+AA  CC +L
Sbjct: 73  LLGYSDSDYAGCKVDRKSTTGTCQFLGRSLVSWSFKKQNSIALSTAEAEYVAAGSCCAQL 132

Query: 196 LYIRDLSKLY 167
           L+++   K++
Sbjct: 133 LWMKQTLKVF 142


>04_01_0630 - 8354628-8355803,8355837-8355926
          Length = 421

 Score = 67.7 bits (158), Expect = 4e-12
 Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
 Frame = -2

Query: 445 KNILRFIKSSKEKGIHYSKGD-NILRGFCDSDFAGDPDTRRSTSGFVIWMNGGPIAWSSR 269
           KN+ R++  +++ G+ + K   + L G+ D+ +  DP   RS +GFV    G  I+W S 
Sbjct: 223 KNVFRYLNGTRDLGLFFKKNQGSTLIGYTDAGYLSDPHNARSQTGFVFLQGGTAISWKSS 282

Query: 268 KQSVVALSSTEAEYIAAAECCKELLYIR 185
           KQ++VA S+  +E IA  E  +E +++R
Sbjct: 283 KQTLVATSTNHSEIIALYEASRECVWLR 310


>07_03_0346 - 17010472-17010843
          Length = 123

 Score = 47.6 bits (108), Expect = 5e-06
 Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
 Frame = -2

Query: 445 KNILRFIKSSKEKGIHYSKGD-NILRGFCDSDFAGDPDTRRSTSGF 311
           K ILR++K S   G+H   G    L  + D+D+AG PD+RRSTSG+
Sbjct: 71  KRILRYVKGSLSAGLHIGTGPVKSLTAYSDADWAGCPDSRRSTSGY 116


>09_02_0336 - 7397745-7398308,7398813-7400723
          Length = 824

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
 Frame = -2

Query: 445 KNILRFIKSSKEKGIHYSKGDNI-LRGFCDSDFAGDPDTRRSTSGFVIWMNGGPIAWSSR 269
           K +L +++ +K   + Y + +++ + G+ DSDFA   D  +STSG+V  + GG I+W S 
Sbjct: 766 KKVLHYLQGTKGLMLSYRRSESLQIVGYSDSDFA--KDNTKSTSGYVFTLAGGAISWKSS 823

Query: 268 K 266
           K
Sbjct: 824 K 824


>04_01_0468 + 6032467-6033670,6033858-6033964,6034122-6034178
          Length = 455

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = -2

Query: 433 RFIKSSKEKGIHYSKGDNILRGFCDSDFAGDPDTRRSTSGFVIW 302
           R+++ + +    + + D  L G+ DSDFA + D RRS +  V++
Sbjct: 363 RYLRGTTDACSKFGRTDKGLVGYVDSDFAANLDKRRSFTVKVLY 406


>01_01_0628 -
           4731052-4731601,4731825-4732782,4733143-4733953,
           4734038-4734241,4734695-4734802,4735930-4736369,
           4736463-4736541
          Length = 1049

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 20/71 (28%), Positives = 33/71 (46%)
 Frame = +3

Query: 15  SVFCQFCARIKQYVINQFSQRKQLLYAIIIVKITTKCFNVHESSKVFYFSVYNLERSLIY 194
           S  C     IK+ + +   + K LL+   I+K+  +     +  + FY+   N++ SL  
Sbjct: 533 SASCNLYDSIKELIESGEIEMKLLLFPSAIIKLVNELKTDCDLHENFYWVETNVDSSLAD 592

Query: 195 SSSLQHSAAAI 227
           SS L  S A I
Sbjct: 593 SSELHGSQAKI 603


>01_06_0227 -
           27686525-27686607,27686731-27686803,27687027-27687315,
           27687755-27687832,27687869-27687992,27688796-27688940,
           27689046-27689166,27689386-27689542,27690704-27690840,
           27691863-27692122,27692199-27692387,27692572-27692775,
           27693390-27693436,27694435-27694462
          Length = 644

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = -2

Query: 427 IKSSKEKGIHYSKGDNILRGFCDSDFAGDPDTRRSTSGFVIWMNGGPIAWSSRKQSVVAL 248
           +K ++ +  H ++G     G  D + A D      TSG V+  N GP   +   Q  ++L
Sbjct: 350 LKQNRLQRDHVNEGSPSYVGE-DQNNASDCPNNDDTSGGVVATNNGPRNRNGSTQKAMSL 408

Query: 247 SSTEAEYIA 221
            S+  EY A
Sbjct: 409 PSSPHEYRA 417


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,617,072
Number of Sequences: 37544
Number of extensions: 171655
Number of successful extensions: 465
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)