Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15a15
         (455 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42390-1|AAC34245.1| 2861|Homo sapiens Trio protein.                   29   10.0 
BC035585-1|AAH35585.1| 1627|Homo sapiens Similar to triple funct...    29   10.0 
AF091395-1|AAC43042.1| 3038|Homo sapiens Trio isoform protein.         29   10.0 

>U42390-1|AAC34245.1| 2861|Homo sapiens Trio protein.
          Length = 2861

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 11/23 (47%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = -3

Query: 297 MVDQLHGAQEN-NQLWHFRALKL 232
           M+D+LH  +++ +Q+WH R LKL
Sbjct: 255 MLDRLHSTRQHLHQMWHVRKLKL 277


>BC035585-1|AAH35585.1| 1627|Homo sapiens Similar to triple
           functional domain (PTPRF interacting) protein.
          Length = 1627

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 11/23 (47%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = -3

Query: 297 MVDQLHGAQEN-NQLWHFRALKL 232
           M+D+LH  +++ +Q+WH R LKL
Sbjct: 255 MLDRLHSTRQHLHQMWHVRKLKL 277


>AF091395-1|AAC43042.1| 3038|Homo sapiens Trio isoform protein.
          Length = 3038

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 11/23 (47%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = -3

Query: 297 MVDQLHGAQEN-NQLWHFRALKL 232
           M+D+LH  +++ +Q+WH R LKL
Sbjct: 255 MLDRLHSTRQHLHQMWHVRKLKL 277


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,956,731
Number of Sequences: 237096
Number of extensions: 959832
Number of successful extensions: 2132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2132
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3815180866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)