Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15a15
         (455 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.29 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   1.2  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   3.6  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   3.6  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   4.8  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   4.8  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   4.8  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   6.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.29
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
 Frame = +1

Query: 229 TQLQCSKVPQLIVFLSSMQLVHH----SSRSQNQK---YFVSCQDHQ 348
           TQLQ S + Q  ++L   Q  HH    S  + NQ+   YF S +DHQ
Sbjct: 86  TQLQ-SFMQQHSLYLQQQQQQHHQDSSSEHASNQERFGYFSSLKDHQ 131


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = +3

Query: 30  FCARIKQYVINQFSQRKQLLYAIIIVKITTKCFNVH-ESSKVFYFSVYNLERSLIYSSSL 206
           +C R   Y  N  S   QLL     V +T  C     ++ KV   +  +  + L+ S+  
Sbjct: 11  YCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPC 70

Query: 207 QH 212
           +H
Sbjct: 71  KH 72


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 370 LSIYCHLYC 396
           L IYC LYC
Sbjct: 209 LGIYCRLYC 217


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
 Frame = -2

Query: 403 IHYSKGDNILRGFCDSDFAGDPD-TRRSTSGFVIWMNGG--PIAWSSRKQSVV--ALSST 239
           I Y+  DN  +    S FA DP  T  + +G    +  G   +A S   Q++   ALSS 
Sbjct: 212 IIYNNSDNSFQRLTSSTFASDPRYTTFTINGESFTLQSGIFGMALSPLTQNLYYSALSSH 271

Query: 238 EAEYIAAAECCK 203
              Y+   +  K
Sbjct: 272 NLNYVNTEQFVK 283


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 304 RSQNQKYFVSCQDHQRNQNHKNLSIYCHLYCNEY 405
           +S+  K  +S   +  N N+ N   Y  LYCN Y
Sbjct: 75  KSKEHK-IISSLSNNYNYNNNN---YKKLYCNNY 104


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 304 RSQNQKYFVSCQDHQRNQNHKNLSIYCHLYCNEY 405
           +S+  K  +S   +  N N+ N   Y  LYCN Y
Sbjct: 75  KSKEHK-IISSLSNNYNYNNNN---YKKLYCNNY 104


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 304 RSQNQKYFVSCQDHQRNQNHKNLSIYCHLYCNEY 405
           +S+  K  +S   +  N N+ N   Y  LYCN Y
Sbjct: 75  KSKEHK-IISSLSNNYNYNNNN---YKKLYCNNY 104


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 9/42 (21%), Positives = 20/42 (47%)
 Frame = +3

Query: 204 LQHSAAAIYSASVLESATTDCFLELHAIGPPFIQITKPEVLR 329
           L   + A +   + E    +  + L+A   PF+ +  PE+++
Sbjct: 51  LVKKSTAHFVKDIYEKYKNEPMVGLYATRSPFLLLNDPELIK 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,086
Number of Sequences: 438
Number of extensions: 2175
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)