Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15a09
         (531 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    27   1.3  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   2.3  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    26   3.0  
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    26   3.0  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   5.3  
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    25   7.0  
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe...    25   7.0  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    25   7.0  
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual        25   9.3  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   9.3  
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom...    25   9.3  
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23...    25   9.3  

>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 9/39 (23%), Positives = 23/39 (58%)
 Frame = +2

Query: 218 LWSKYMFPKPFAPTTLKSYKSRFIKIVYCSVDDVHLEDM 334
           +WS  + P+P    +++S+  + + ++   VD++ L D+
Sbjct: 109 VWSYQIIPEPTISNSIESHLRKCLMVLLSRVDEIDLADV 147


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 341  SLDMEFDSIENQTLLIDPQELCRRMLELRSVTKETLQLTINFYTN 475
            S+D  F  I  Q L+  PQ LC ++ ++         +   FYTN
Sbjct: 2259 SIDQFFKDIRKQILI--PQTLCDKIEQILPCLASQCSMLSRFYTN 2301


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +2

Query: 389 DPQELCRRMLELRSVTKETLQLTINF 466
           DP  +C  M  L  VT   LQL INF
Sbjct: 258 DPDTMCSYMSVLPGVTNYFLQLYINF 283


>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 356 FDSIENQTLLIDPQELCRRMLELRSVTKETLQL 454
           FDS  N  L I  Q++ +  ++LRSV ++ LQL
Sbjct: 84  FDSEGNVCLAILKQQVFKPSIKLRSVLEQILQL 116


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = -1

Query: 459 IVNCSVSLVTDRSSSMRLHSSWGSMRSVWFSIESNSMSNEYDMSSR*TSST 307
           I + S S  +  S+S  + SS  S  S   ++ S+SMS+    SS  TSS+
Sbjct: 290 ISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSS 340


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 8/39 (20%), Positives = 26/39 (66%)
 Frame = +2

Query: 368 ENQTLLIDPQELCRRMLELRSVTKETLQLTINFYTNMMN 484
           E ++++  P+E C +++ ++S+TK   + +++ Y  +++
Sbjct: 166 EGESVIQCPEESCTQIVSIQSITKVLDEKSLDRYHRLLD 204


>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 325

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = -3

Query: 184 LPIGGQIEHGLEPGSGLNFYFPRIKIVFVANIKTVHCG*SSLLKTKGESVSIL 26
           L IGG++ +   P  G   +   +K ++  N+K + C  +SLL +  ES S+L
Sbjct: 225 LGIGGRLSYISAPKQGSIEFSYDMKQIYRKNLKIIGC--NSLLLSLVESNSLL 275


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +2

Query: 203  VKNN--SLWSKYMFPKPFAPTTLKSYKSRFIKIVYCSVD 313
            ++NN   LWS + F  P    T K+++ RF++ +  S D
Sbjct: 1526 IQNNVLELWSLFDFLMPGFLGTEKTFQERFVRPIAASRD 1564


>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 450

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 420 SSMRLHSSWGSMRSVWFSIESNSMS 346
           +S +L++   S+R  WFS +SN +S
Sbjct: 250 NSPKLYAYLKSLRETWFSDDSNILS 274


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -3

Query: 526 ARQHNHAGNFVFGQIHHVGVKVYSQL*RFFGDRSKFEHAPA 404
           A Q  +  N +F  I H  V   S    FFGD + F  APA
Sbjct: 128 ALQRQYPENPIFSLITHTPVSQRSVDEFFFGDCAPFYLAPA 168


>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 370

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 15/72 (20%), Positives = 31/72 (43%)
 Frame = +2

Query: 299 YCSVDDVHLEDMSYSLDMEFDSIENQTLLIDPQELCRRMLELRSVTKETLQLTINFYTNM 478
           YCS +   +  +  +L++    I+N+ LL+  +       EL  + K    +TI+    +
Sbjct: 56  YCSAEGFGVASIEEALELRLSGIQNRILLL--EGFFTDEDELSLIDKYNFSITIHCEEQL 113

Query: 479 MNLPEYKIPRMV 514
            +   Y   + V
Sbjct: 114 KSFMNYPFKKPV 125


>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
           Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 345 NEYDMSSR*TSSTEQYTILINRDL*LFKVVGANG 244
           NE  +    TS  E  +ILI+RDL    +V A G
Sbjct: 53  NEIALIDPETSMEEASSILIDRDLSALPIVAAKG 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,263,138
Number of Sequences: 5004
Number of extensions: 47131
Number of successful extensions: 146
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)