Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15a09
         (531 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15782-1|AAA61417.1|  717|Homo sapiens cleavage stimulation fact...    30   4.4  
BC108319-1|AAI08320.1|  717|Homo sapiens cleavage stimulation fa...    30   4.4  
AL121926-1|CAC48252.1|  708|Homo sapiens dJ85M6.1 (cleavage stim...    30   4.4  

>U15782-1|AAA61417.1|  717|Homo sapiens cleavage stimulation factor
           77kDa subunit protein.
          Length = 717

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 19/80 (23%), Positives = 39/80 (48%)
 Frame = +2

Query: 119 WKIKIQSTPRFESVFDLATDRQRCTPDEVKNNSLWSKYMFPKPFAPTTLKSYKSRFIKIV 298
           WK+ I++  + ++   +    QRC   +V +  LW  Y+         L SYK +  +  
Sbjct: 68  WKLYIEAEIKAKNYDKVEKLFQRCLM-KVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAY 126

Query: 299 YCSVDDVHLEDMSYSLDMEF 358
             ++D + +E MSY + +++
Sbjct: 127 DFALDKIGMEIMSYQIWVDY 146


>BC108319-1|AAI08320.1|  717|Homo sapiens cleavage stimulation
           factor, 3' pre-RNA, subunit 3, 77kDa protein.
          Length = 717

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 19/80 (23%), Positives = 39/80 (48%)
 Frame = +2

Query: 119 WKIKIQSTPRFESVFDLATDRQRCTPDEVKNNSLWSKYMFPKPFAPTTLKSYKSRFIKIV 298
           WK+ I++  + ++   +    QRC   +V +  LW  Y+         L SYK +  +  
Sbjct: 68  WKLYIEAEIKAKNYDKVEKLFQRCLM-KVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAY 126

Query: 299 YCSVDDVHLEDMSYSLDMEF 358
             ++D + +E MSY + +++
Sbjct: 127 DFALDKIGMEIMSYQIWVDY 146


>AL121926-1|CAC48252.1|  708|Homo sapiens dJ85M6.1 (cleavage
           stimulation factor, 3' pre-RNA, subunit 3, 77kD)
           protein.
          Length = 708

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 19/80 (23%), Positives = 39/80 (48%)
 Frame = +2

Query: 119 WKIKIQSTPRFESVFDLATDRQRCTPDEVKNNSLWSKYMFPKPFAPTTLKSYKSRFIKIV 298
           WK+ I++  + ++   +    QRC   +V +  LW  Y+         L SYK +  +  
Sbjct: 59  WKLYIEAEIKAKNYDKVEKLFQRCLM-KVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAY 117

Query: 299 YCSVDDVHLEDMSYSLDMEF 358
             ++D + +E MSY + +++
Sbjct: 118 DFALDKIGMEIMSYQIWVDY 137


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,728,406
Number of Sequences: 237096
Number of extensions: 1663879
Number of successful extensions: 3295
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3295
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5160237082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)