Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15a09
         (531 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81067-4|CAB02976.2|  632|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF099918-4|AAN63402.1|  243|Caenorhabditis elegans Hypothetical ...    27   6.3  
AF099918-3|AAN63401.1|  436|Caenorhabditis elegans Hypothetical ...    27   6.3  

>Z81067-4|CAB02976.2|  632|Caenorhabditis elegans Hypothetical
           protein F23A7.5 protein.
          Length = 632

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 394 PRTVQAHARTSIGHQRNATVDYKLLHQHDEFARIQNSPHGYAAA 525
           PR  + HA  S  H+R+ TV  +L H++    R + S   + ++
Sbjct: 270 PRDPRRHANGSSSHRRDKTVSDELQHENSHTPRQEESQSTFGSS 313


>AF099918-4|AAN63402.1|  243|Caenorhabditis elegans Hypothetical
           protein H05C05.2b protein.
          Length = 243

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
 Frame = +2

Query: 164 DLATDRQRC-TPDEVKNNSLWSKYMFPK------PFAPTTLKSYKSRFIKIVYCSVDDVH 322
           D+ T R    +P  V NN + +    P       P AP + ++Y ++F+K +YC + D+ 
Sbjct: 66  DVTTSRHDVESPKNVVNNFVVTPIETPSTPVQYPPQAPFSDENYYAKFLKEMYCFLSDID 125

Query: 323 LEDMSYSLDMEFDSIE-NQTLLIDPQEL 403
               S   D+   +   N+ + + P  +
Sbjct: 126 KNRFSKLKDLSRQAARLNKGMKLQPSTI 153


>AF099918-3|AAN63401.1|  436|Caenorhabditis elegans Hypothetical
           protein H05C05.2a protein.
          Length = 436

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
 Frame = +2

Query: 164 DLATDRQRC-TPDEVKNNSLWSKYMFPK------PFAPTTLKSYKSRFIKIVYCSVDDVH 322
           D+ T R    +P  V NN + +    P       P AP + ++Y ++F+K +YC + D+ 
Sbjct: 259 DVTTSRHDVESPKNVVNNFVVTPIETPSTPVQYPPQAPFSDENYYAKFLKEMYCFLSDID 318

Query: 323 LEDMSYSLDMEFDSIE-NQTLLIDPQEL 403
               S   D+   +   N+ + + P  +
Sbjct: 319 KNRFSKLKDLSRQAARLNKGMKLQPSTI 346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,758,455
Number of Sequences: 27780
Number of extensions: 276916
Number of successful extensions: 805
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)