Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15a09
         (531 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   1.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   3.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.5  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +2

Query: 341 SLDMEFDSIENQTLLIDPQELCRRMLELRSVTKETLQLTINFYTNMMNLPEYKIPRM 511
           S  M+F+S  + T      ++C  M+E  S T + L    N    ++  PE ++P++
Sbjct: 131 SCAMKFESYPHDT------QICSMMIESLSHTTQDLVFIWNMTDPLVVNPEIELPQL 181



 Score = 22.2 bits (45), Expect = 3.4
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +2

Query: 209 NNSLWSKYMFPKPFAPTTLKSYKSRFIKIVYCSVDDVHLEDMSYSLDM 352
           N  L+ K+  PK     T+      +  +   S+D ++ E M+Y  D+
Sbjct: 13  NPKLYDKHRAPKFLGQPTIV-----YFHVTVLSIDSINEESMTYVADI 55


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 10/50 (20%), Positives = 26/50 (52%)
 Frame = +2

Query: 347 DMEFDSIENQTLLIDPQELCRRMLELRSVTKETLQLTINFYTNMMNLPEY 496
           D+++++ E  + LI+  ++       R    E+ +  +NFY N  ++ ++
Sbjct: 269 DLKYNTWEPISNLINCSDILEEFERNRLQLLESFKRKVNFYPNNQDIEKF 318


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +2

Query: 416 LELRSVTKETLQLTINFYTNMMNLPEYKIPRMVMLPR 526
           + L S  +E     INF     + P YK PR    PR
Sbjct: 133 VSLSSPPREPGTPRINFTKLKRHHPRYKRPRTTFEPR 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,120
Number of Sequences: 438
Number of extensions: 3513
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)