Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15a07
(515 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 29 0.41
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 1.7
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 26 3.8
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 26 3.8
SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces pom... 25 6.7
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom... 25 6.7
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 25 8.9
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 25 8.9
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 25 8.9
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 25 8.9
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 29.1 bits (62), Expect = 0.41
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 306 ECNV--KAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGIRYK 479
+CN+ + ++S +R F ++ +L C S T+ + + ++ C KCK +R++
Sbjct: 179 KCNLCYECIESDELRANCPFTDCNSINHLTCLASSFLTEECQVLPIEGMCTKCKRVLRWR 238
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 27.1 bits (57), Expect = 1.7
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Frame = +3
Query: 300 NTECNVKAVDSACMRCRRSFAVYPAVTYLH---CGHS-CLCTDCDETVNVDN-TCPKCKS 464
+ E V CM C + A+T + CGH+ C V+N +CP CK
Sbjct: 180 SAETTVPQECGLCMMCVQRGDERVAITTPYTTDCGHTYCYACIMSRLKLVNNVSCPICKH 239
Query: 465 GIRYKLKYKTL 497
IR+ L +T+
Sbjct: 240 RIRFALPDQTM 250
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -1
Query: 482 QFISNAAFTFRTRIVHVYRFVAIGAQTRMSAMQI 381
Q++SN + RT ++ + V+ +T+MSA Q+
Sbjct: 996 QYLSNMSHEIRTPLIGITGMVSFLLETQMSAEQL 1029
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.8 bits (54), Expect = 3.8
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = +3
Query: 264 LEIIKTDRNLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDN 443
+++IK D ++ + C C V P V+Y C H + DC +
Sbjct: 769 IQVIKNDIEKKRQLLGTIQDSEKVCDNCEGLLDV-PFVSY-SCLH-LVHRDCA----TET 821
Query: 444 TCPKCKSG 467
CPKCK+G
Sbjct: 822 VCPKCKAG 829
>SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 25.0 bits (52), Expect = 6.7
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +3
Query: 9 KTVLCCAYVVRR 44
KT LCC+YV+R+
Sbjct: 63 KTKLCCSYVIRK 74
>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 25.0 bits (52), Expect = 6.7
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +1
Query: 187 GTAARCSRCGATTDV*LTLRAFATKRWKSLRPTETCRSTQNAM*RLSTVHACV 345
G R S CGA D+ LR + K PTE +A+ + T+ + V
Sbjct: 306 GKILRASWCGARYDIQGVLREACSNLLKKRVPTELRLKRAHALLEIGTIFSNV 358
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 24.6 bits (51), Expect = 8.9
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +2
Query: 284 QKLAAQHRMQCEGCRQCMHA 343
+KL Q++ +CE C+Q + A
Sbjct: 297 EKLTKQNKYRCENCKQLVDA 316
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +2
Query: 281 RQKLAAQHRMQCEGCRQCMHALQKKFRSLPRRYLSALRTFVFVH 412
RQ L + H M G C+H + + RY +++ + F H
Sbjct: 482 RQTLLSYHMMGQGGQFACLHLIFLQIHLYVHRYAASISSVPFSH 525
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +3
Query: 237 DFAGIRNKTLEIIKTDRNLPLNTEC-NVKA 323
DFA + ++ + +P+N EC N+KA
Sbjct: 323 DFANLYRPYFNFLRQKKLIPINCECLNIKA 352
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/32 (37%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Frame = -3
Query: 357 NFFCNACMHCRQPSH-----CILC*AASFCRS 277
NF C HC QP H C +C C S
Sbjct: 130 NFMYAICDHCEQPIHNVRYKCSVCDDYDICES 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,055,693
Number of Sequences: 5004
Number of extensions: 38471
Number of successful extensions: 111
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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