Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15a07
         (515 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.46 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   1.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   3.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   3.3  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   7.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.46
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 85   QPPRSTTCTTVALRRKRFEFWLA 153
            QPP  TTCTT+  +  R   W++
Sbjct: 1083 QPPHDTTCTTLTSQTIRIS-WMS 1104


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/47 (19%), Positives = 22/47 (46%)
 Frame = -1

Query: 323 SLHIAFCVERQVSVGLNDFQRFVANARKVNYTSVVAPHREHLAAVPI 183
           ++ +  C    +++      R++A  R V+Y  +++P R  L    +
Sbjct: 143 AVDVWMCTASILNLCAISLDRYLAVTRPVSYPQIMSPRRARLLVATV 189


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 451 GHVLSTFTVSSQSVHKHECP 392
           GH +  FT   +  H+ +CP
Sbjct: 294 GHTVRCFTGGPRKSHESQCP 313



 Score = 20.6 bits (41), Expect = 10.0
 Identities = 5/7 (71%), Positives = 7/7 (100%)
 Frame = -3

Query: 321 PSHCILC 301
           PSHC++C
Sbjct: 191 PSHCVVC 197


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 399 SCLCTDCDE 425
           SC C DCDE
Sbjct: 325 SCSCLDCDE 333


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 64 NFDSNLPQPPRS 99
          N  S++PQPPRS
Sbjct: 51 NTISSVPQPPRS 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,092
Number of Sequences: 438
Number of extensions: 2867
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)