Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15a03
(524 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 28 0.74
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 27 1.3
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit... 27 2.3
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po... 26 4.0
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 25 5.2
SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces pombe... 25 6.9
SPCC4G3.17 |||HD domain|Schizosaccharomyces pombe|chr 3|||Manual 25 9.1
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos... 25 9.1
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po... 25 9.1
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro... 25 9.1
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 28.3 bits (60), Expect = 0.74
Identities = 10/45 (22%), Positives = 28/45 (62%)
Frame = +1
Query: 160 AFDINTFDITNDDSIVAFQQNNIQELENFEQWFKNNLSYSFSQKA 294
+F+ + D+T++++I + + +E + + +NN++ S SQ++
Sbjct: 26 SFEADDIDVTDENTIFSTSRKEQSTIEPMDSFVENNIANSSSQQS 70
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 27.5 bits (58), Expect = 1.3
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Frame = +1
Query: 163 FDINTFDITNDDSIVAFQQNNIQELENFEQWFKNNLSYSFSQKAEKVVNPNRNW--NDNT 336
+DI D + F+ N QEL F + K+++ Y K + W T
Sbjct: 1595 YDILLDSFIEDCIRMFFENGNHQELRKFLNFPKDSIIYDSDFKTLVSEEGSFQWVKLQPT 1654
Query: 337 VFDNLSPWT 363
FD+LS WT
Sbjct: 1655 NFDSLSNWT 1663
>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
Rep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 472
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +1
Query: 163 FDINTFDITNDDSIVAFQQNNIQELENFEQWFKNNLSYS 279
FD N + + +D V NN +L Q + N +YS
Sbjct: 277 FDPNVYALNTNDGPVTSTDNNCDQLNTRMQAWNNGFNYS 315
>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 351
Score = 25.8 bits (54), Expect = 4.0
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 256 FKNNLSYSFSQKAEKVVNPNRNWNDNTVFDNLS 354
F N L+Y+ + PN +W D FDN++
Sbjct: 131 FSNPLNYNHQARRHAESTPNASWTDQ--FDNVA 161
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 25.4 bits (53), Expect = 5.2
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = +1
Query: 292 AEKVVNPNRNWNDNTVFDNLSPWTSVP 372
A+K+++ + WN + F + S W ++P
Sbjct: 40 AQKILDYSAEWNSHEYFPSPSNWRALP 66
>SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 396
Score = 25.0 bits (52), Expect = 6.9
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +1
Query: 169 INTFDITNDDSIVAFQQNNIQELENFEQ 252
I F+ + + +++ F +NN + +ENF Q
Sbjct: 27 IKKFERSLNSALLEFDENNQETIENFRQ 54
>SPCC4G3.17 |||HD domain|Schizosaccharomyces pombe|chr 3|||Manual
Length = 198
Score = 24.6 bits (51), Expect = 9.1
Identities = 8/29 (27%), Positives = 16/29 (55%)
Frame = -1
Query: 386 TVPKSGTLVHGLKLSNTVLSFQFLLGFTT 300
T P++G L HG++ ++ + +G T
Sbjct: 21 TTPRTGWLYHGIEKPESIADHMYRMGILT 49
>SPBC215.03c |csn1||COP9/signalosome complex subunit
Csn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 24.6 bits (51), Expect = 9.1
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +1
Query: 157 DAFDINTFDITNDDSIVAFQQNNIQELENFEQWFKNNL 270
D F+ D+ +S+ ++ N+++L + +KNNL
Sbjct: 69 DCFENEQLDVEWVESVTFHRKQNLEQLRRELKAYKNNL 106
>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 596
Score = 24.6 bits (51), Expect = 9.1
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +1
Query: 322 WNDNTVFDNLSPWTSVPDFGTVCHTLIGYCVRYNNTSDALYQNPELAYNLI 474
WN + N+ WT V T ++ G+ + N DA + E YN I
Sbjct: 540 WN---LTSNIYRWTPVSTNSTSKNSFNGHTINENMRYDAHMDSIEFFYNFI 587
>SPAC23H4.10c |thi4||thiamine-phosphate
dipyrophosphorylase/hydroxyethylthiazole kinase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 24.6 bits (51), Expect = 9.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 184 ITNDDSIVAFQQNNIQELE 240
I DD+I+ NNI+E+E
Sbjct: 101 ILGDDAIIGVSTNNIEEIE 119
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,733,975
Number of Sequences: 5004
Number of extensions: 32460
Number of successful extensions: 105
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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