Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15a03
         (524 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973...    29   3.0  
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435...    29   3.0  
01_05_0733 - 24707753-24707819,24708906-24709723                       29   3.0  
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976...    28   5.3  
05_03_0197 + 9607586-9607592,9607652-9607940,9608599-9608817,961...    27   7.0  
07_03_1396 - 26259614-26259739,26259853-26259939,26260032-262604...    27   9.2  

>08_02_0864 +
           21994286-21994989,21996257-21996958,21997221-21997374,
           21997494-21997838,21998323-21999240,21999312-21999640,
           21999709-21999832,21999901-22000071,22000188-22001648,
           22002647-22002910,22003866-22004189
          Length = 1831

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 130 FVDFDPLPFDAFDINTFDITNDDSIVAFQQNNIQELENFEQWFK 261
           +VD    P++ F IN  D  +DD  V    +  Q L+N +++FK
Sbjct: 221 YVDNTSDPYN-FGINRSDDEDDDYAVFHSDSKTQHLQNSDEYFK 263


>01_07_0290 -
           42542201-42542359,42542443-42542551,42542729-42543516,
           42543601-42543744,42543840-42544013,42544056-42544369,
           42544467-42544636,42544916-42545043,42545125-42545185,
           42545473-42545642,42545783-42547387,42547479-42547631,
           42547747-42547905,42548066-42548236,42548357-42548404,
           42548509-42548624,42548885-42549029,42549122-42549220
          Length = 1570

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = +1

Query: 142 DPLPFDAFDINTFDITNDDSIVAFQQNNIQELENFEQWFKNNLSYSFSQKAEKVVNPNRN 321
           + L  D F IN  D T    I+   QNN  EL  + +   + +++  S     +V+P  +
Sbjct: 606 ESLLIDCFSINLGDFTVPSPILEAIQNNPLELNKYREPIMDFITH--SSAIGLLVDPKSD 663

Query: 322 WNDNTVFDNL 351
            N N V + L
Sbjct: 664 SNMNKVVEQL 673


>01_05_0733 - 24707753-24707819,24708906-24709723
          Length = 294

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 127 VFVDFDPLPFDAFDINTFDITNDDSIVAFQQ 219
           V +  D L  D F INTFD    D++VAF++
Sbjct: 201 VELGLDYLLADGFLINTFDAMEHDTLVAFKE 231


>06_03_0912 + 25896152-25896451,25896528-25897296,25897492-25897658,
            25898932-25901013,25901155-25901730,25904503-25905648,
            25907056-25908693
          Length = 2225

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
 Frame = +1

Query: 226  IQELENFEQWFKNNLS-------YSFSQKAEKVVNPNRNWNDNTVFDNLSPWTSV 369
            ++E+EN E   K  LS       Y+++  ++K  +  R   +  VF+ L P  S+
Sbjct: 1716 LREMENLELQTKKELSSLSLEWSYAYADSSDKYASSERGMQNRAVFEKLQPHDSL 1770


>05_03_0197 +
           9607586-9607592,9607652-9607940,9608599-9608817,
           9610270-9610405,9610975-9611223,9611523-9611816
          Length = 397

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 214 QQNNIQELENFEQWFKNNLSY 276
           Q  +++EL NF QW+KN   Y
Sbjct: 87  QHVHLKELRNFSQWWKNIYGY 107


>07_03_1396 -
           26259614-26259739,26259853-26259939,26260032-26260409,
           26260497-26260692,26260794-26261032,26261132-26261272
          Length = 388

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 343 DNLSPWTSVPDFGTVCHTLIGYCVRYNNTSDAL 441
           DN++P+ S+P+FG     L  YC R  + +D+L
Sbjct: 339 DNVAPYISLPEFGE--PELGAYCSRLLSGTDSL 369


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,449,339
Number of Sequences: 37544
Number of extensions: 206461
Number of successful extensions: 535
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)