Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15a03
         (524 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   2.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.5  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   3.3  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   5.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.8  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    21   7.7  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 337 PCCRSNFYWDL 305
           PC    FYWDL
Sbjct: 83  PCSSFRFYWDL 93


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 337 PCCRSNFYWDL 305
           PC    FYWDL
Sbjct: 83  PCSSFRFYWDL 93


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 337 PCCRSNFYWDL 305
           PC    FYWDL
Sbjct: 83  PCSSFRFYWDL 93


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +1

Query: 226 IQELENFEQWFKNNLSYSFSQKAEKVVNPNRNWNDN 333
           I  L N      NN  Y+++       N N N+N+N
Sbjct: 315 ISSLSNKTIHNNNNYKYNYNNNNYNNNNYNNNYNNN 350


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +1

Query: 262 NNLSYSFSQKAEKVVNPNRNWND 330
           N    + S + +K++N + N+ND
Sbjct: 378 NEYMLALSNRMQKIINNDFNFND 400


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 366  RSGLWYRVPHAHRVLRTLQQHQRR 437
            R+G +Y VPH+    +  ++H  R
Sbjct: 1064 RAGSYYGVPHSTLEYKVKERHLMR 1087


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 454 ELAYNLINGLRIICSKLPDPP 516
           E A   I  LR +CSK  D P
Sbjct: 30  EEAKKTIKNLRKVCSKKNDTP 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,421
Number of Sequences: 438
Number of extensions: 2599
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)