Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14p23
(406 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3... 118 5e-28
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb... 58 5e-10
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 29 0.21
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom... 29 0.36
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 28 0.48
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p... 28 0.63
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 27 0.84
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 27 1.1
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 1.1
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 26 1.9
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 4.5
SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces ... 25 4.5
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory... 25 4.5
SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyc... 25 5.9
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 25 5.9
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 25 5.9
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 24 7.8
SPAC23H3.07c |mrp2||mitochondrial ribosomal protein subunit S14|... 24 7.8
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 24 7.8
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 24 7.8
>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 191
Score = 118 bits (283), Expect = 5e-28
Identities = 57/112 (50%), Positives = 79/112 (70%), Gaps = 4/112 (3%)
Frame = +3
Query: 78 VVFVLGAPGSGKGTQCSMISKEYD-YVHLSAGDLLREERQRPGSEYGEMIEEKIRNGEIV 254
V+FVLG PG+GKGTQC +++++D +VH+SAGD LREE+ RPGS+YG +I+E I++G+IV
Sbjct: 4 VIFVLGGPGAGKGTQCDRLAEKFDKFVHISAGDCLREEQNRPGSKYGNLIKEYIKDGKIV 63
Query: 255 PVEVTCSLLHKAMQK---SGKERFLIDGFPRNQDNMGWLGARHGPDKTKLLF 401
P+E+T SLL M++ G ++FLIDGFPR D P K L F
Sbjct: 64 PMEITISLLETKMKECHDKGIDKFLIDGFPREMDQCEGFEKSVCPAKFALYF 115
>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 58.0 bits (134), Expect = 5e-10
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Frame = +3
Query: 81 VFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLREERQRPGSEYGEMIEEKIRNGEIVPV 260
+ ++G PG+GKGTQ I K+Y HL+ GD+LR + R +E G+ ++ + G +V
Sbjct: 6 LILVGPPGAGKGTQAPNIQKKYGIAHLATGDMLRSQVARQ-TELGKEAKKIMDQGGLVSD 64
Query: 261 EVTCSLLHKAMQKSG--KERFLIDGFPR 338
++ ++ + + K F++DGFPR
Sbjct: 65 DIVTGMIKDEILNNPECKNGFILDGFPR 92
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 29.5 bits (63), Expect = 0.21
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 72 PQVVFVLGAPGSGKGTQCSMISKEY 146
P V+ ++G GSGK T CS ++ Y
Sbjct: 101 PSVIMMVGLQGSGKTTTCSKLALHY 125
>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 592
Score = 28.7 bits (61), Expect = 0.36
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Frame = +3
Query: 78 VVFVLGAPGSGKGTQCSMISKEYDYV-----HLSAGDLLREERQRPGSEYGEMI----EE 230
++ ++G P +GK S +S+ Y+++ S GD REE S + EE
Sbjct: 145 IIILVGIPATGKSYIGSKLSRYYNWLKYNCRFFSVGDKRREEGASTYSMSADFFDIKNEE 204
Query: 231 KIRNGEIVPVEVTCSLLHKAMQKSG 305
+ E V +E LLH + ++G
Sbjct: 205 TFKFRENVALETLEDLLHWMIHENG 229
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 28.3 bits (60), Expect = 0.48
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +3
Query: 81 VFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLRE 185
+ + G PG+GK T +++ + ++ GD+++E
Sbjct: 11 IIICGTPGTGKTTLAEQVAETTELENICIGDVVKE 45
>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 235
Score = 27.9 bits (59), Expect = 0.63
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +3
Query: 78 VVFVLGAPGSGKGTQCSMISKEYD 149
++ + G PGSGK T C++++K ++
Sbjct: 31 LIGLAGGPGSGKSTLCAILAKAWN 54
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 27.5 bits (58), Expect = 0.84
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 60 NKMVPQVVFVLGAPGSGKGTQCSMISKEYDYVHLSAGDL 176
N+ V V+G GSGK T +S++ + ++ DL
Sbjct: 10 NQPYKYVFVVIGPAGSGKTTMAKAVSEKLGFEYIEGDDL 48
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 27.1 bits (57), Expect = 1.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 138 KEYDYVHLSAGDLLREERQRPGSEYGEMI 224
KE DY SA + + ++ PGSE GE++
Sbjct: 56 KEIDYAVKSAKEAFKTWKKVPGSEKGELL 84
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 27.1 bits (57), Expect = 1.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 72 PQVVFVLGAPGSGKGTQCSMISKEYDYVHLS 164
P +V V+G PG+GK T + + Y +S
Sbjct: 74 PVIVAVMGPPGTGKSTLIKSLVRRYSKYTIS 104
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 26.2 bits (55), Expect = 1.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 18 LMLNSVLRQSSRYINKMVPQVVFVLGAPG 104
L+LN +L +S +NK++ + V+ PG
Sbjct: 1280 LVLNVILTESELEVNKVIEEFQLVINQPG 1308
>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 315
Score = 25.0 bits (52), Expect = 4.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 69 VPQVVFVLGAPGSGKGTQC 125
+P V+G PGSGK T C
Sbjct: 1 MPFCQVVVGPPGSGKSTYC 19
>SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 226
Score = 25.0 bits (52), Expect = 4.5
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = -1
Query: 145 YSLEIIEHCVPLPEPGA 95
Y+++++EH PLP+P A
Sbjct: 189 YTVQLVEHGDPLPQPQA 205
>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
factor |Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.0 bits (52), Expect = 4.5
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -2
Query: 279 IRSM*PPPELSHRYEFFLQSFLRILNQASGVLLEVNRLHSNGHN 148
IR+ P SH +LR N+A+ V+ H + HN
Sbjct: 136 IRNSAPSATRSHSTPCVAPGYLRTSNEAADVVFPHEEAHFSNHN 179
>SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 248
Score = 24.6 bits (51), Expect = 5.9
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -2
Query: 234 FFLQSFLRILNQASGVLLEVNRLHSNGHNHILWKSLSTVYLYQSQE 97
+FL+ FL L A G +LEV WK ++T+ L + E
Sbjct: 74 YFLRYFL--LRNAKGDVLEVGSGPGTNFPFYKWKKINTLTLVEPAE 117
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 24.6 bits (51), Expect = 5.9
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +3
Query: 24 LNSVLRQSSRYINKMVP--QVVFVLGAPGSGKGTQCSMISKEYDY 152
++ LR S Y + +P + + G PGSGK + ++ E DY
Sbjct: 224 VHDFLRNSQWYDTRGIPYRRGYLLYGPPGSGKTSFLYALAGELDY 268
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 24.6 bits (51), Expect = 5.9
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -3
Query: 383 VGTMTRSQPSHIILITRKAIYEETFFTGFLH 291
V +T Q ++L+ ++IYE+ F GF++
Sbjct: 788 VQNVTDLQSDTVLLVNPQSIYEQYAFEGFVN 818
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 24.2 bits (50), Expect = 7.8
Identities = 13/54 (24%), Positives = 30/54 (55%)
Frame = +3
Query: 120 QCSMISKEYDYVHLSAGDLLREERQRPGSEYGEMIEEKIRNGEIVPVEVTCSLL 281
Q I+K+ + + S D+ ERQR + ++++++I+N + ++ C+ L
Sbjct: 1444 QLREITKQKNMLEQSLDDM--RERQRSTNRNLDVLKKQIQNQLLQEADIVCATL 1495
>SPAC23H3.07c |mrp2||mitochondrial ribosomal protein subunit
S14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 24.2 bits (50), Expect = 7.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 126 STVYLYQSQELPTRRLLEA 70
S +Y+Y++ ELP R LEA
Sbjct: 30 SNLYIYRNPELPLRVRLEA 48
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 24.2 bits (50), Expect = 7.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 51 RYINKMVPQVVFVLGAPGSGK 113
++ N M P+ V + G PG+GK
Sbjct: 306 KFFNIMPPRGVLLYGPPGTGK 326
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 24.2 bits (50), Expect = 7.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 201 GSEYGEMIEEKIRNGEIVPVEVTCSLLHKAMQKSGKERFLID 326
GS+ EE+ +GE+V EV ++L ++ K+ L D
Sbjct: 97 GSDESSSEEEEDSDGELVTPEVDAAILRMIVKIRNKDPDLYD 138
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,856,862
Number of Sequences: 5004
Number of extensions: 39003
Number of successful extensions: 130
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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