Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14p23
         (406 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   4.0  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   5.3  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   7.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.0  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    20   9.3  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    20   9.3  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 96  APGSGKGTQCSMIS 137
           +P + KG++CSMI+
Sbjct: 275 SPATPKGSKCSMIT 288


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 313 RSLPDFCMALCNKEHVTSTG 254
           R   D C+ +CN E+V   G
Sbjct: 49  RDAYDNCITVCNMENVDPLG 68


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 399 KVAWFCRDHDALPAIPY 349
           ++A+  R  DA+P +PY
Sbjct: 216 EIAFAYRYGDAIPTVPY 232


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 380  GTMTRSQPSHIILITRKAIYEE 315
            GT+ RS  SH     R+ +YEE
Sbjct: 1670 GTVIRSIRSHSTWDPRRHMYEE 1691


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 155 PFECRRFTSRRTPE 196
           P ECR  T+R T +
Sbjct: 171 PIECRELTARFTTD 184


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 220 ISPYSEPGLWRSSR 179
           I PY E  +WR +R
Sbjct: 139 IKPYDEYYVWRDAR 152


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,641
Number of Sequences: 438
Number of extensions: 3051
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)