Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14p16
         (595 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0064 + 444888-444959,445073-445277,445736-445901,446029-44...    29   3.7  
12_01_0578 - 4731024-4731134,4731200-4731337,4732438-4732500,473...    27   8.5  
11_06_0727 - 26709399-26710863,26713529-26713898,26714115-26714421     27   8.5  

>08_01_0064 +
           444888-444959,445073-445277,445736-445901,446029-446251,
           446982-447058,447370-447557,447845-447942,448202-448335,
           448421-448555,448832-448960,449263-449632,449897-450018,
           450155-450274,450396-450626,450706-450894,450978-451089,
           451193-451438
          Length = 938

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 484 SHMLVVVTT*HQVGCELVHPIYAIKKN 564
           S+ L++VT   Q+GC   HPIY I ++
Sbjct: 100 SYYLILVTKRCQIGCICGHPIYCIDES 126


>12_01_0578 -
           4731024-4731134,4731200-4731337,4732438-4732500,
           4732596-4732667,4732751-4732891,4733011-4733126,
           4733222-4733255,4734151-4734261
          Length = 261

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 207 ILQTMILMDSYKLTVYIGWDLIKNYSFKVI 118
           ++ T+ L DS  L +YIG D    Y+FKV+
Sbjct: 198 LIGTLGLNDSNVLPIYIGDDETDEYAFKVL 227


>11_06_0727 - 26709399-26710863,26713529-26713898,26714115-26714421
          Length = 713

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 550 HRWGGRAHSPPGVKWLRRQAYGSPIYHGTKPV 455
           H   G   +PPG  W   +A G P+  G  P+
Sbjct: 98  HAHPGAGLNPPGGFWRSTEAAGDPVLPGLHPI 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,365,412
Number of Sequences: 37544
Number of extensions: 253179
Number of successful extensions: 492
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)