Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14p14
         (312 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41824| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.0  
SB_3867| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   2.3  
SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.3  
SB_52212| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)                 27   3.1  
SB_47804| Best HMM Match : E-MAP-115 (HMM E-Value=1.4)                 27   3.1  
SB_18379| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)                 27   3.1  
SB_15824| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_46327| Best HMM Match : Rho_N (HMM E-Value=4.2e-05)                 27   3.1  
SB_19314| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)                 27   3.1  
SB_5092| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.1  
SB_24778| Best HMM Match : DUF1409 (HMM E-Value=4.2)                   27   4.1  
SB_4107| Best HMM Match : M (HMM E-Value=8e-22)                        26   5.4  
SB_3599| Best HMM Match : CLN3 (HMM E-Value=1.2e-08)                   26   5.4  
SB_34410| Best HMM Match : Remorin_C (HMM E-Value=1.5)                 26   7.2  
SB_43224| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.002)           26   7.2  
SB_36059| Best HMM Match : TolA (HMM E-Value=0.1)                      26   7.2  
SB_12932| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)                  26   7.2  
SB_7493| Best HMM Match : HlyD (HMM E-Value=0.13)                      26   7.2  
SB_31203| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_20103| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_13555| Best HMM Match : B5 (HMM E-Value=1.4)                        25   9.5  
SB_56034| Best HMM Match : GATA (HMM E-Value=5.6e-17)                  25   9.5  
SB_50073| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_39785| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  

>SB_41824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 451

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = +2

Query: 62  EIKDIKDFLIKARRKDAKSVKIKKNPENVKFK-VRCSRF-LYTLVITDKEKAEKLKQSLP 235
           E ++ KDFL  A R   KSVK K+  + +    ++ +R+ L T+   DK+  E++ +   
Sbjct: 37  EKEEEKDFLHSAERNSLKSVKPKEEAKELVIPLMKKNRWILPTVEGLDKQAMEEVIKEAQ 96

Query: 236 PGLQVKE 256
             LQ KE
Sbjct: 97  KDLQSKE 103


>SB_3867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 242

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 191 ITDKEKAEKLKQSLPPGLQVKEV 259
           I + E+ EK+KQ   PGL VK++
Sbjct: 134 ILENERREKIKQFTEPGLTVKKI 156


>SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1421

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +2

Query: 56  PREIKDIKDFLIKARRK-DAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 232
           P+  +D+ + L++ RR   A +  IKK PE++   ++  +    L  T  + +  +  S+
Sbjct: 731 PKLQQDLFNVLVRFRRNLVALACDIKKMPEDINMNIQWQQIETVLKSTYMDDSIDIVASV 790

Query: 233 PPGLQVKEV 259
             G+++ EV
Sbjct: 791 EEGIELYEV 799


>SB_52212| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)
          Length = 384

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 77  KDFLIKARRKDAKSVKIKKNPENVKFKVRC 166
           K+F+ K R K  K V  +K P  VKF   C
Sbjct: 191 KEFITKIRPKVIKLVNDRKKPIKVKFVFTC 220


>SB_47804| Best HMM Match : E-MAP-115 (HMM E-Value=1.4)
          Length = 402

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = +2

Query: 38  LFVFNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAE 214
           L V ++  E+      LI A+R  AKS ++K  PE   F  +C+   Y L++  K+ A+
Sbjct: 137 LGVSDVDAELLKTARSLISAQRAGAKS-EVK--PEMSAFVSKCNAAAYDLILDGKQTAD 192


>SB_18379| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)
          Length = 398

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 77  KDFLIKARRKDAKSVKIKKNPENVKFKVRC 166
           K+F+ K R K  K V  +K P  VKF   C
Sbjct: 359 KEFITKIRPKVIKLVNDRKKPIKVKFVFTC 388


>SB_15824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 77  KDFLIKARRKDAKSVKIKKNPENVKFKVRC 166
           K+F+ K R K  K V  +K P  VKF   C
Sbjct: 239 KEFITKIRPKVIKLVNDRKKPIKVKFVFTC 268


>SB_46327| Best HMM Match : Rho_N (HMM E-Value=4.2e-05)
          Length = 856

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 77  KDFLIKARRKDAKSVKIKKNPENVKFKVRC 166
           K+F+ K R K  K V  +K P  VKF   C
Sbjct: 239 KEFITKIRPKVIKLVNDRKKPIKVKFVFTC 268


>SB_19314| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)
          Length = 708

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 77  KDFLIKARRKDAKSVKIKKNPENVKFKVRC 166
           K+F+ K R K  K V  +K P  VKF   C
Sbjct: 239 KEFITKIRPKVIKLVNDRKKPIKVKFVFTC 268


>SB_5092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 226

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 195 VMTRVYRNLEHRTLNLTFSGFFFILT 118
           VM R    +  RT++LTFS F  +LT
Sbjct: 198 VMARTVSQITTRTISLTFSRFMVLLT 223


>SB_24778| Best HMM Match : DUF1409 (HMM E-Value=4.2)
          Length = 74

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 68  KDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRF-LYTLVITDKEKAE 214
           KD+KD   K +    + VK KKN + V+ ++  ++  L  ++IT K K E
Sbjct: 25  KDLKDVQEKHKTDKEELVKCKKNIKTVEQELATTKHQLNEMLITVKTKIE 74


>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
          Length = 2039

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +2

Query: 50   NMPREIKDIKDFLIKARRKDAKSVKIKKNPENV 148
            N  RE KD+   L ++RR +AK+V   KN EN+
Sbjct: 1276 NRVRE-KDLTTALDESRRAEAKAVDKVKNLENI 1307


>SB_3599| Best HMM Match : CLN3 (HMM E-Value=1.2e-08)
          Length = 465

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 102 GKTP-NRSK*RRTLRMSSSRFDAQGSCTPWSSL 197
           GK+P NR K R  L  SSS  D + S   WS L
Sbjct: 2   GKSPSNRDKMREMLEYSSSNDDFRESEDEWSPL 34


>SB_34410| Best HMM Match : Remorin_C (HMM E-Value=1.5)
          Length = 303

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +2

Query: 38  LFVFNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAE 214
           L V ++  E+      LI A+R  AK+      PE   F  +C+   Y L+I  K+ A+
Sbjct: 38  LGVSDVDAELLKTARSLISAQRSSAKN---GVTPEMSAFVSKCNAAAYDLIIDGKQTAD 93


>SB_43224| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.002)
          Length = 123

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 62  EIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKL 220
           E++ IKD   +   K+ + V+ K  P  VKF +      YT V+   EK + L
Sbjct: 31  ELRLIKDLFFRGYNKNVRPVEDKSMPVEVKFGI-----AYTQVVDLIEKDQVL 78


>SB_36059| Best HMM Match : TolA (HMM E-Value=0.1)
          Length = 1936

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 104  KDAKSVKIKKNPENVKFKVRCS 169
            +DA    I++NPE V FK+ CS
Sbjct: 1793 EDAVVCCIRENPEPVVFKISCS 1814


>SB_12932| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
          Length = 577

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 74  IKDFLIKARRKDAKSVKIKKNPENVKFKVRC 166
           +K+FLI+      K+ + K NPE V  ++RC
Sbjct: 476 VKEFLIRKFELGEKTGR-KSNPEQVAIEMRC 505


>SB_7493| Best HMM Match : HlyD (HMM E-Value=0.13)
          Length = 570

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 200 KEKAEKLKQSLPPGLQVKEV 259
           K K E LKQSLP G++V  V
Sbjct: 542 KAKLEALKQSLPEGVEVVTV 561


>SB_31203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 117 RSK*RRTLRMSSSRFDAQGSCTPWSSLTKRRLRNLSRVYLQVSK 248
           R+K    LR SSS    + +CT W   TK  ++ +  V  + ++
Sbjct: 37  RAKDVGLLRSSSSIPRVEYACTVWDPFTKTNIKRIEMVQRRAAR 80


>SB_20103| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 790

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 47  FNMPREIKDIKDFLIKARRKDAKSVKIKKNP 139
           F    EIK +K+   + RR  AKS+ I+ NP
Sbjct: 518 FKYDYEIKPLKEKSRQQRRVIAKSIDIETNP 548


>SB_13555| Best HMM Match : B5 (HMM E-Value=1.4)
          Length = 369

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
 Frame = +2

Query: 74  IKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKA--EKLKQ--SLPPG 241
           +KD L + R  +     +K NP+ +KFK+    +L  ++  D+  A  EK+K    +PP 
Sbjct: 119 LKDLLDRCREHN-----LKLNPKKLKFKLDRVTYLGHVLSADEISADPEKVKAICEMPPP 173

Query: 242 LQVKEVK 262
           + +  VK
Sbjct: 174 VDIVGVK 180


>SB_56034| Best HMM Match : GATA (HMM E-Value=5.6e-17)
          Length = 297

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/45 (22%), Positives = 22/45 (48%)
 Frame = +2

Query: 113 KSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQ 247
           K  KI ++P++++    CS F +T  ++    +    +   PG +
Sbjct: 44  KKAKIGQSPDSIRSLASCSSFSFTDEVSSNASSSFSSEEESPGFK 88


>SB_50073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 62  EIKDIKDFLIKARRKDAKSVKIKKNPENVKFKV 160
           E++ IKD   +   K+ + V+ K  P  VKF +
Sbjct: 8   ELRLIKDLFFRGYNKNVRPVEDKSMPVEVKFGI 40


>SB_39785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 138 LRMSSSRFDAQGSCTPWSSLTKRRLRNLSRVYLQV 242
           LR+ ++R D QG    WS    +R+RN S  Y +V
Sbjct: 35  LRIKNNRVD-QGLTNLWSYKQGQRVRNTSNNYTRV 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,755,085
Number of Sequences: 59808
Number of extensions: 130839
Number of successful extensions: 373
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 387973711
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)