Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14p12
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    30   0.32 
SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30 family|Sc...    28   1.3  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    27   3.0  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    26   5.2  
SPAC6C3.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.9  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    25   6.9  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   9.1  

>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = +3

Query: 378 HVANTSAHVRETLEGIKR-VNKHEIIVVISGVAA-HFETSSAV 500
           HV+NTS  + E +E I + V+KH +     G+A+ H +TS ++
Sbjct: 205 HVSNTSTELAENVESILQFVSKHIVPDGAKGIASIHLKTSQSI 247


>SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 284

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = -2

Query: 460 ITTIISCLLTRLIPSSVSRTCALVFATCTPALDPSLKRANVTAATKRSRVLH 305
           ITT++ CLLT  IP   S    +   T   A  P        AA KR  ++H
Sbjct: 207 ITTVLKCLLTNFIPKGWSAIDNVAIKTADSASLPIWTSDTNLAAHKR-HIVH 257


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -2

Query: 175 TNCYVPVTILIVTRTQLLPLKCPAP-TLYRATASTSQRIAFILIPDLELGTMTSEGS 8
           T+C  P T+LIVT +      CP P T+   T  T+     +  P     T+T   S
Sbjct: 168 TSCN-PATVLIVTTSGSTSTSCPPPTTILIVTVPTTTTTTTVGYPGSVTTTLTGTPS 223


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 190 RIEVYRFTHSTRYLYDAVFLSRPSTILAHI 279
           +IE   F+ S R +YD+++    ST+ A+I
Sbjct: 765 KIEYLDFSDSERKIYDSLYTKAKSTVNANI 794


>SPAC6C3.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 100

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 212 VNLYTSILNYSSNKLLCPSNNFDSN 138
           + ++T+   YSS + L PS N D N
Sbjct: 12  IAIFTNAKRYSSFRFLFPSKNLDPN 36


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1254

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
 Frame = -1

Query: 236  SYRYRVECVNLYTSILNYSSNKLLCPSNNFDSNTDAAFAFEVPGSYPLSGNGL----NEP 69
            S +Y+ E  N   ++L     +L C S NF +     +  EVP    +  N       + 
Sbjct: 843  SQKYQSELKNELYALLEQYKKQLRCSSLNFKNIGKEVYQVEVPSDVKVPVNWCKMSGTKK 902

Query: 68   TYRFYLD 48
            T R+Y D
Sbjct: 903  TNRYYND 909


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
 Frame = -2

Query: 460  ITTIISCLLTRLIPSSVSRTCALV------FATCTPALDPSLKRANVTAAT 326
            +  ++SC    LI  S+   CAL+      FA   P +D  LK   VT  T
Sbjct: 1015 VMRMLSCNNASLIRVSMDTVCALIYQLNVDFAIFIPMIDKCLKMNGVTHET 1065


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,580,944
Number of Sequences: 5004
Number of extensions: 52763
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)