Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14p12
(635 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0680 - 27217563-27220088 33 0.14
05_06_0235 - 26609049-26609468,26610068-26610343,26611579-266117... 30 1.8
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157... 29 2.3
08_01_0722 + 6412654-6412860,6413142-6413687,6413745-6413877,641... 29 3.1
10_01_0167 + 1876793-1877402,1877423-1877642,1877760-1879534,188... 28 7.1
01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489... 28 7.1
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 27 9.4
03_01_0071 + 580988-581134,581276-581359,581499-581573,581892-58... 27 9.4
>04_04_0680 - 27217563-27220088
Length = 841
Score = 33.5 bits (73), Expect = 0.14
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 209 LRTLRDIYTMPYFYPGHLQYWHT*RSCPPAQC 304
+ ++ D Y MPY Y HLQY + PPA C
Sbjct: 578 VNSISDEYPMPYRYIAHLQYPRNYQPAPPAGC 609
>05_06_0235 -
26609049-26609468,26610068-26610343,26611579-26611746,
26611850-26611945
Length = 319
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 521 SWDELLEDGTRRFEMRC 471
SWD+ L+ G RRFE +C
Sbjct: 206 SWDDALQSGARRFEHKC 222
>04_03_0867 -
20414999-20415160,20415255-20415384,20415515-20415702,
20415967-20416001,20416363-20416579,20416737-20416820,
20417609-20417875,20417954-20418061,20418163-20418249,
20418629-20419399
Length = 682
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Frame = +1
Query: 217 STRYLYDAVFLSRPSTILAHIEVLSPGTMC---VTRVTASSPQSHSPVSKTGLTL 372
ST Y SR + I H +L G T + +P H+P+S LTL
Sbjct: 22 STEPFYSVASCSRTTRIACHASLLPHGAALRALATAMATPTPMPHTPISSQTLTL 76
>08_01_0722 +
6412654-6412860,6413142-6413687,6413745-6413877,
6413917-6414035,6414128-6414883,6415209-6415258,
6415560-6416679
Length = 976
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -1
Query: 212 VNLYTSILNYSSNKLLCPSNNFDSNTDAAFAFEVPGSYPLSGNGLN--EPTYRFYLD 48
V+L +S++ + C N D+N E+ +Y + GN N PT R +LD
Sbjct: 28 VDLKSSLITMAQASPFCGKPNEDANAHLQQFLEICSTYTIKGNFYNGLTPTSRDHLD 84
>10_01_0167 +
1876793-1877402,1877423-1877642,1877760-1879534,
1880019-1880199,1881313-1881529
Length = 1000
Score = 27.9 bits (59), Expect = 7.1
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Frame = +1
Query: 367 TLVCTLRTLVHTFGRHSRGLSGLTNMRLL--LLSRALQRISKRLVPSSNNSSQLR-RNVL 537
T +C L+ L+H FG + G+ NMR L L + S VP + LR +
Sbjct: 643 TELCLLKKLLHLFGNSLKLPDGIGNMRNLQVLTGINISNSSASTVPELGELTSLRDLKIS 702
Query: 538 VATFTSRPSNRSNRMFLLLC 597
++ S+ + + LC
Sbjct: 703 LSDKLSKCKTKEEMLLASLC 722
>01_01_0645 +
4890647-4890682,4891684-4891929,4892021-4892317,
4892407-4892574,4892674-4892841,4892924-4893004,
4893105-4893171,4893657-4893751,4894027-4894099,
4894177-4894247,4894325-4894374,4895263-4895375,
4895461-4895513
Length = 505
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -1
Query: 143 SNTDAAFAFEVPGSY 99
SNTD A AFEVPG +
Sbjct: 305 SNTDVALAFEVPGGW 319
>12_02_0973 + 24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 27.5 bits (58), Expect = 9.4
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Frame = -1
Query: 233 YRYRVECVNLYTSILNYSSNKLLCPSNNFDSNTDAAFAFEVP--------GSYPLSGNGL 78
Y++ V NL + S N L+ S + N+ F + P G+ L GN L
Sbjct: 3302 YQFVVAVNNLAQLKRSTSGNSLMSQSKHHLDNSPLHFR-DTPVRQTDRDSGAKSLGGNSL 3360
Query: 77 NEPTYRFYLD 48
NEP +F++D
Sbjct: 3361 NEPPSQFFID 3370
>03_01_0071 +
580988-581134,581276-581359,581499-581573,581892-581973,
582078-582223,582337-582408,582765-582837,582933-582998,
583089-583123,583316-583387,583494-583622,583706-583813,
584062-584118,584323-584439,584530-584612,585345-585411,
585705-585776,585874-585924,586704-586763,586867-587016,
587107-587322
Length = 653
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 155 NNFDSNTDAAFAFEVPGSYPLSGNGLNEPTYRFYL 51
NN D DAAF + S L G L +P++R ++
Sbjct: 303 NNLDQEEDAAFNIKYLTSSKLMGLELKDPSFRRHI 337
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,806,363
Number of Sequences: 37544
Number of extensions: 378698
Number of successful extensions: 1041
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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