Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14p10
         (583 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.2  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   2.2  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.9  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   8.9  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   8.9  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   8.9  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   8.9  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   8.9  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   8.9  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 477 RTGCFPYIKYHCSRKRAEDLNMSDKFMRIIK 569
           +TG  PY+++ C   R     ++D + +I K
Sbjct: 266 QTGLSPYLRFGCLSTRLFYYQLTDLYKKIKK 296


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +2

Query: 86  VVTELHTNPKS*LNIKTTFQSLICRTLH*FITYWSENKTNISN 214
           ++ EL  NP+   NIK T   +  +    F+  +  + T +SN
Sbjct: 273 MLMELQKNPQKLENIKLTDSLIAAQAFVFFLAGFETSSTTMSN 315


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 513 SRKRAEDLNMSDKFMRII 566
           S  + +D+N+ DK+ RII
Sbjct: 454 SMPKIKDVNIIDKYSRII 471


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 4   SNFNFQLISFNIFVYICININ 66
           +N+N+   + N +  +C NIN
Sbjct: 87  NNYNYSNYNNNNYKQLCYNIN 107


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 4   SNFNFQLISFNIFVYICININ 66
           +N+N+   + N +  +C NIN
Sbjct: 87  NNYNYSNYNNNNYKQLCYNIN 107


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 4   SNFNFQLISFNIFVYICININ 66
           +N+N+   + N +  +C NIN
Sbjct: 87  NNYNYSNYNNNNYKQLCYNIN 107


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 4   SNFNFQLISFNIFVYICININ 66
           +N+N+   + N +  +C NIN
Sbjct: 87  NNYNYSNYNNNNYKQLCYNIN 107


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 4   SNFNFQLISFNIFVYICININ 66
           +N+N+   + N +  +C NIN
Sbjct: 87  NNYNYSNYNNNNYKQLCYNIN 107


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 4   SNFNFQLISFNIFVYICININ 66
           +N+N+   + N +  +C NIN
Sbjct: 87  NNYNYSNYNNNNYKQLCYNIN 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,225
Number of Sequences: 438
Number of extensions: 3468
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)