Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14p01
         (582 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal prote...   299   7e-82
Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ...    29   1.8  
Z34802-8|CAH10787.1|  704|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z34802-7|CAA84338.2|  828|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z31590-7|CAA83463.1|  361|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U53148-2|AAB37078.1|  360|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 3 protein.
          Length = 247

 Score =  299 bits (735), Expect = 7e-82
 Identities = 145/185 (78%), Positives = 163/185 (88%), Gaps = 1/185 (0%)
 Frame = +2

Query: 29  MAVN-NISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 205
           MA N N++KK+K V  G+FKAELN FL +ELAEDGYSGVEVR TP R+E+IIMATRTQ+V
Sbjct: 1   MAANQNVTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNV 60

Query: 206 LGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRA 385
           LGE+GRRI+ELTSVVQKRF   E SVELYAEKV+ RGLCA+AQ ESLRYKL+GGLAVRRA
Sbjct: 61  LGERGRRIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRA 120

Query: 386 CYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLR 565
           CYGVLRFIMESGA+G EV+VSGKLRGQRAK+MKFVDGLMIHSG P NDY+  A RHV LR
Sbjct: 121 CYGVLRFIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLR 180

Query: 566 QGVLG 580
           QGV+G
Sbjct: 181 QGVIG 185


>Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical
           protein C05C10.2b protein.
          Length = 1553

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 20  VAIMAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGY 133
           +A     +I KK  F GDG F     E    E+ +DGY
Sbjct: 885 IAARLSRDIPKKFSFKGDGEFFVSQREVFENEILDDGY 922


>Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical
           protein C05C10.2a protein.
          Length = 1551

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 20  VAIMAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGY 133
           +A     +I KK  F GDG F     E    E+ +DGY
Sbjct: 885 IAARLSRDIPKKFSFKGDGEFFVSQREVFENEILDDGY 922


>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
           protein Y18D10A.1 protein.
          Length = 1634

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +2

Query: 194 TQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATR 313
           + S+ G+KG+ +REL + + K  ++ E++  + AE  A R
Sbjct: 396 SSSIHGKKGKTVRELQTEMMKGESVKEKAARMRAEASAGR 435


>Z34802-8|CAH10787.1|  704|Caenorhabditis elegans Hypothetical
           protein M88.5b protein.
          Length = 704

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +2

Query: 116 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 277
           L   G  G    +  IR+E+ +       ++G+ G+ +REL  +      IPE+
Sbjct: 543 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 596


>Z34802-7|CAA84338.2|  828|Caenorhabditis elegans Hypothetical
           protein M88.5a protein.
          Length = 828

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +2

Query: 116 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 277
           L   G  G    +  IR+E+ +       ++G+ G+ +REL  +      IPE+
Sbjct: 667 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 720


>Z31590-7|CAA83463.1|  361|Caenorhabditis elegans Hypothetical
           protein R01H10.6 protein.
          Length = 361

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = -3

Query: 529 IIARVSRVDHESIYKLH*FGTLTTQLARYNNFTTTGTRFHDETENTIASTTYSETSDKL 353
           ++ R   + +E+IY L      TT+      FTTT    H +  NTI+S + +  + K+
Sbjct: 89  LVTRNRGISNEAIYVLAKVSATTTKFEFI--FTTTNPASHSKLFNTISSISRAYETTKM 145


>U53148-2|AAB37078.1|  360|Caenorhabditis elegans Hypothetical
           protein C26F1.6 protein.
          Length = 360

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +3

Query: 351 TSLSEVSLYVVLAMVFSVSSWNLVPVVVKLLYLASC 458
           T++  V LY V  M  SVS W LV + +   YLA C
Sbjct: 77  TAMIMVYLYPVTIMFQSVSVWLLVSITID-RYLAVC 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,218,984
Number of Sequences: 27780
Number of extensions: 308512
Number of successful extensions: 897
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)