Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14o13
(507 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0668 - 4882174-4884204 228 2e-60
07_01_0075 - 558829-560859 225 2e-59
08_01_0387 - 3426058-3426168,3426279-3426473,3426612-3426724,342... 37 0.008
01_03_0056 + 12089404-12090300,12090429-12090581,12090999-120911... 30 1.2
08_02_1310 - 26037025-26038074 29 2.8
08_02_1305 - 26013022-26014107 27 8.7
06_01_0449 - 3176135-3176329,3176531-3177289,3177420-3177905,317... 27 8.7
>06_01_0668 - 4882174-4884204
Length = 676
Score = 228 bits (557), Expect = 2e-60
Identities = 102/140 (72%), Positives = 122/140 (87%)
Frame = +1
Query: 88 MSLYNFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHD 267
M YNFK+I VVP KDFIDIILS+TQR+TPTVVHK Y ISRIR FY+RKVKYTQ NF++
Sbjct: 1 MVQYNFKRITVVPPGKDFIDIILSRTQRQTPTVVHKGYSISRIRQFYMRKVKYTQSNFYE 60
Query: 268 RLSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYG 447
+LS +I +FP+LDD+HPFY DL++VLY+KDHYKL LGQ+NTAR++I +AKDY+RLLKYG
Sbjct: 61 KLSTVIDDFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNIIAKIAKDYLRLLKYG 120
Query: 448 DSLYRCKQLKRAALGRMATI 507
DSLYRCK LK AALGRM T+
Sbjct: 121 DSLYRCKCLKVAALGRMCTV 140
>07_01_0075 - 558829-560859
Length = 676
Score = 225 bits (549), Expect = 2e-59
Identities = 101/140 (72%), Positives = 121/140 (86%)
Frame = +1
Query: 88 MSLYNFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHD 267
M YNFK+I VVP KDFIDIILS+TQR+TPTVVHK Y ISRIR FY+RKVKYTQ NF++
Sbjct: 1 MVQYNFKRITVVPPGKDFIDIILSRTQRQTPTVVHKGYAISRIRQFYMRKVKYTQSNFYE 60
Query: 268 RLSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYG 447
+LS +I +FP+LD +HPFY DL++VLY+KDHYKL LGQ+NTAR++I +AKDY+RLLKYG
Sbjct: 61 KLSTVIDDFPRLDGIHPFYGDLLHVLYNKDHYKLALGQINTARNIIAKIAKDYLRLLKYG 120
Query: 448 DSLYRCKQLKRAALGRMATI 507
DSLYRCK LK AALGRM T+
Sbjct: 121 DSLYRCKCLKVAALGRMCTV 140
>08_01_0387 -
3426058-3426168,3426279-3426473,3426612-3426724,
3427121-3427157,3427270-3427341,3427849-3427962,
3428129-3428200,3428343-3428381,3429340-3429414,
3429561-3429674,3429749-3429813,3429927-3430047,
3430942-3431063,3431547-3431634
Length = 445
Score = 37.1 bits (82), Expect = 0.008
Identities = 29/132 (21%), Positives = 62/132 (46%), Gaps = 1/132 (0%)
Frame = +1
Query: 103 FKKIAVVPTAKDFIDIILSKTQRKTPTV-VHKHYKISRIRGFYIRKVKYTQQNFHDRLSR 279
F++I +V A D + K++ PT + K R +G +++ + L
Sbjct: 83 FQRIPMVMPATDILMSAQRKSRNVPPTKGIANIAKRERNKG--AKQLDALMKEISVPLRT 140
Query: 280 IIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGDSLY 459
+ FPK D+HP+ L+ + + + +Y+ + +++ R I++V K + + SL
Sbjct: 141 YTENFPKRRDLHPYERSLIELTFGEGYYEKVIARVDALRKKINSVGKQHASVC--AKSLT 198
Query: 460 RCKQLKRAALGR 495
+ + +R + GR
Sbjct: 199 KREAEERLSEGR 210
>01_03_0056 +
12089404-12090300,12090429-12090581,12090999-12091157,
12091575-12091734,12092185-12092201,12092682-12092798,
12092914-12093303
Length = 630
Score = 29.9 bits (64), Expect = 1.2
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Frame = +1
Query: 193 KHYK--ISRIRGFYIRKVKYTQQNFHDRLSRIIQEFPKLDDVHPFYADLMNVLYDKDHYK 366
K YK +S G+Y+ KV + +S + FP +D P ++ N L+D+ K
Sbjct: 423 KRYKELLSDSEGYYVPKVIDELSSKKVLMSEFVPGFP-IDKTDPNWS---NFLFDEPTRK 478
Query: 367 LGLGQLNTARHLIDNVAKDYVRLL 438
L AR DY+R++
Sbjct: 479 FNLIDFGAARDFPKRFVDDYLRMV 502
>08_02_1310 - 26037025-26038074
Length = 349
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +1
Query: 337 NVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGDSLYRCKQLKRAALGRMA 501
++L + Y+LG +L + + L+DNV + V + Y C +LK+ L +A
Sbjct: 260 HLLAAAERYELGGLKLLSTKKLLDNVTPENVAGIIVCAETYGCPELKKKCLDYLA 314
>08_02_1305 - 26013022-26014107
Length = 361
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +1
Query: 355 DHYKLGLGQLNTARHLIDNVAKDYVRLLKYGDSLYRCKQLKRAAL 489
D Y L ++ + L+DN+ D V + +Y C +LK +
Sbjct: 278 DRYALDRLKIMCGQRLLDNMTPDSVAAILVCAEMYNCPELKNKCI 322
>06_01_0449 -
3176135-3176329,3176531-3177289,3177420-3177905,
3178302-3178421,3178637-3178703,3178784-3179007,
3179149-3179234,3179936-3180509
Length = 836
Score = 27.1 bits (57), Expect = 8.7
Identities = 23/99 (23%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Frame = +1
Query: 214 IRGFYIRKVKYTQQNFHDRLSRIIQEFPKLD-DVHPFYADLMNVLYDKDHYKLGLGQLNT 390
+ Y+ +V+ ++ + LSR+ QEF +L +L V ++ LGQL+
Sbjct: 361 LEDLYLSQVQQRKET-EESLSRVQQEFEQLKIQQDEVTVELQRVNEQNENL---LGQLSD 416
Query: 391 ARHLIDNVAKDYVRLLKYGDSLYRCKQLKRAALGRMATI 507
+R + + ++ +LL+ D+ R + R G+M ++
Sbjct: 417 SREHFEWLLSEHDQLLRERDNAVREVEELRQKRGQMLSV 455
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,815,608
Number of Sequences: 37544
Number of extensions: 239628
Number of successful extensions: 501
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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