Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14o12
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 32 0.064
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 29 0.60
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 25 7.3
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 25 7.3
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 25 7.3
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb... 25 7.3
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 25 9.7
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa... 25 9.7
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 25 9.7
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 31.9 bits (69), Expect = 0.064
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Frame = +3
Query: 333 SLIVNGFKYNQVD--------DHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYA 476
+L GF YN + D+V C C +W +D+ H+T SP C +A
Sbjct: 43 TLATVGFYYNPISESNSEERLDNVTCYMCTKSFYDWEDDDDPLKEHITHSPSCPWA 98
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Frame = +3
Query: 336 LIVNGFKYN---QVDDHVVCEYCEAEIKNWSEDE 428
+ +GF YN D C YC+ + +W D+
Sbjct: 144 MAASGFVYNPTADAKDAAHCLYCDINLHDWEPDD 177
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 28.7 bits (61), Expect = 0.60
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = -2
Query: 541 SFTSTALMVMLSPNDSCSAILLAYAQYGDKVTCAYSIHSSSDQFFISASQY 389
SF S ++V+ S + + ++ Q + C Y +H+SS + I + Y
Sbjct: 711 SFPSCTVLVVNSELELINEVIGLNRQLDPTIVCGYEVHNSSWGYLIERASY 761
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/41 (24%), Positives = 19/41 (46%)
Frame = +3
Query: 375 HVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKIAEHE 497
H +C C + SED + ++ +SP C+ + + E
Sbjct: 764 HFLCRECLTHVITSSEDMAKQTSNENISPKCSVCEEYIDTE 804
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 324 FINSLIVNGFKYNQVDDHVVCEYCEAEI 407
FIN++ G ++ HVV + CE E+
Sbjct: 901 FINNIHYEGENTKKISVHVVSQRCEDEV 928
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +3
Query: 357 YNQVDDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYAN 479
++ + D + E E ++ + E E I+Y S + AY N
Sbjct: 504 FSHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYTN 544
>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 730
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -2
Query: 544 PSFTSTALMVMLSPNDSCSAILLAYAQYGDKVTCAY 437
PSF AL ++ P DS S I Q + T Y
Sbjct: 544 PSFVEQALQDLVQPTDSASQIFPLNPQSPSQFTIKY 579
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 234 NFRDN-IAEHVFDMLLERHGSFENYPIVNT 320
NF D I E V+ L ++ F+N+PI NT
Sbjct: 902 NFNDRFICESVYH-LHDKVSKFQNFPITNT 930
>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 452 GYVCIFNTLVFGPIFYFCFTILAHNVIVDLIVFKPVND 339
GYV F +L+ GP F + + + + L +FKP+ D
Sbjct: 170 GYVFFFPSLLVGPAFDY----VDYERFITLSMFKPLAD 203
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 360 NQVDDHVVCEYCEAEIKNWSEDECIEYAHVTLS 458
N D+ CE CE +I +E +Y H+ LS
Sbjct: 532 NSADETYTCEECEQKITLSERNEHEDY-HIALS 563
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,131,462
Number of Sequences: 5004
Number of extensions: 40852
Number of successful extensions: 134
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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