Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14o12
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   3.6  
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      22   3.6  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   8.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.2  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = -3

Query: 318 CLQWDNFQTS 289
           CL+W+N+Q+S
Sbjct: 8   CLRWNNYQSS 17


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = -3

Query: 318 CLQWDNFQTS 289
           CL+W+N+Q+S
Sbjct: 8   CLRWNNYQSS 17


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 72  YPQCTSLTPRQ 104
           YP C +LTP Q
Sbjct: 218 YPYCYNLTPNQ 228


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 5/10 (50%), Positives = 10/10 (100%)
 Frame = -3

Query: 318 CLQWDNFQTS 289
           CL+W+N+Q++
Sbjct: 12  CLRWNNYQSN 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,277
Number of Sequences: 438
Number of extensions: 2718
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)