Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14o06
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    29   0.74 
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    28   1.3  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    26   4.0  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    26   4.0  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    26   5.2  
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   5.2  
SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces pomb...    26   5.2  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    25   6.9  
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    25   6.9  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    25   9.1  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   9.1  
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   9.1  
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz...    25   9.1  

>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -1

Query: 474 NQCDPKVLHVANDCQSFGALVGRVQNRFYFVYAVYKSEYVVPVL 343
           +QC+  +L + + C  F   VG   ++F+F+   Y + Y + VL
Sbjct: 114 SQCNKCILRMDHHCMWFKNCVGFRNHKFFFLECFYLNLYSICVL 157


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/57 (19%), Positives = 27/57 (47%)
 Frame = +1

Query: 448 MQNFWVTLIIDYENAITYYTDTRNQKMDESLKQIVTDHVPDGQIANLQLGNAAYALV 618
           +  +W +L++  ++ +    +   Q  +E  K   + + PD  +  L L  A ++L+
Sbjct: 56  LYEYWESLVLKLDHYVAAALENHEQSFEELEKITASLYQPDDNLQTLDLSLAEFSLI 112


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 478 DYENAITYYTDTRNQKMDESLKQIVTDHVPD 570
           D + AI YY +  +Q  DE+L Q   D   D
Sbjct: 74  DEQEAIQYYINVESQDADETLHQEAQDSSED 104


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 339 TTRPGPRIQTCRRHRQNKTDFGLYRPKHQKIDNRLQH 449
           T R   R     R ++ +     Y  K +K++NRLQH
Sbjct: 786 TLRKDARFIARERRQEQRAKDQAYNEKMRKLENRLQH 822


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 20/93 (21%), Positives = 38/93 (40%)
 Frame = +1

Query: 271 NNSLQISDRQQELMCLAQDEFGLQQDRDHVFRLVDGIDKIKPILDSTDQSTKRLTIVCNM 450
           N +++I    Q   C +    G   +R  +  L D ++    +   + +S K L ++   
Sbjct: 476 NKTVKIMSNSQRRSCQSVLSEG---NRTILLHLADQMNACS-LQTKSRESIKTLKLIEEK 531

Query: 451 QNFWVTLIIDYENAITYYTDTRNQKMDESLKQI 549
             +W      Y N I  + D R    DE++ +I
Sbjct: 532 DEYWEPETAGYFNTIVGWADQRKSLYDEAVIKI 564


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 219 FIGSDVCYIDFAFFCMFYIY 160
           F+G DVC+ +  FF  F  Y
Sbjct: 145 FVGKDVCFSNQKFFYQFLFY 164


>SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 316

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 255 CIDYTLIIGVDHFIGSDVCYIDFA 184
           CID T + G D F  SD+   DFA
Sbjct: 201 CIDLTDVRGNDDFFSSDLSADDFA 224


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +1

Query: 487 NAITYYTDTRNQKMDESLKQIVTDHVPDGQIANLQLGNAAYALVNARL 630
           N  T     +N+K+  SL +++ +        +  +GN  + L NA L
Sbjct: 18  NETTVKDTLKNKKLSSSLNKVIEETNVGSSGCDRTIGNLLFTLANASL 65


>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 335 PNSS*AKHISSCCRSLICKLLLKE 264
           P  + A  ISS C++LI KLL+K+
Sbjct: 442 PEYADAPSISSLCKNLIRKLLVKD 465


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = +2

Query: 11  FTMPLF*LLNHYAAYVIVCGHIYRK-----ISEKLHFCLSRIELN*LNPVLGVF 157
           FT P+  L+  Y+++V    ++  +      SEK HF +   EL  +  ++GVF
Sbjct: 363 FTEPIVFLITLYSSFVYAILYLLLEAYPIIFSEKRHFSMGVAELPYIGLLVGVF 416


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 531 IHFLISSVCVIRYSVFIIYN 472
           +HF  S VCV+ YS+  + N
Sbjct: 453 VHFFFSLVCVVYYSITPLRN 472


>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +1

Query: 268 FNNSLQISDRQQELMCLAQDEFGLQQDRDHVFRLVDGIDKIKPILDSTDQSTK 426
           FN  L    + QE++ L+ + +  + D  HV ++++ I+    I     +STK
Sbjct: 287 FNTLLYYRYQLQEIL-LSYNHYPQESDMSHVHQILEMIENFSAINSELLESTK 338


>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -2

Query: 320 AKHISSCCRSLICKLLLKE 264
           A ++SS C+SLI +LL+K+
Sbjct: 407 APNVSSTCKSLIRRLLVKD 425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,638,559
Number of Sequences: 5004
Number of extensions: 54871
Number of successful extensions: 169
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)