Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14o06
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1112 + 30488678-30488806,30489047-30489228,30489310-304895...    30   1.3  
04_04_0348 + 24568834-24568904,24569019-24569148,24569310-245694...    29   3.1  
02_03_0317 - 17659356-17659634,17660028-17660552,17660587-176606...    28   5.4  
01_06_0271 - 28055367-28055402,28055503-28055622,28055710-280558...    28   5.4  
02_05_0704 - 31064996-31065214,31065306-31065466,31065583-310656...    28   7.1  
10_08_1023 - 22341815-22342042,22342179-22342247,22342717-223428...    27   9.4  

>03_05_1112 +
           30488678-30488806,30489047-30489228,30489310-30489505,
           30490095-30491117
          Length = 509

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
 Frame = -1

Query: 579 YLSIWDV-ICDYLFQTFIHFLISSVCVIRYSVFI-------IYNQCDPKVLHVANDCQSF 424
           +L +WD+       QTF H  +SSV V R   FI       ++N  DP+ + V   C  F
Sbjct: 376 HLRLWDIRSAKCTSQTFAHLDVSSVSVSRNRNFILTSGKDNVHNLFDPRTMEV---CGKF 432

Query: 423 GALVGRV 403
            A+  RV
Sbjct: 433 KAMGNRV 439


>04_04_0348 +
           24568834-24568904,24569019-24569148,24569310-24569459,
           24569546-24569650,24569808-24570029,24570162-24570274,
           24570371-24570470,24571125-24571325,24571401-24571549,
           24571624-24571765,24571851-24571991,24572098-24572286,
           24572622-24572835,24573198-24573291,24573671-24573905,
           24574242-24574433,24574919-24575017,24575443-24575532,
           24575709-24575912,24575994-24576269,24576974-24577096,
           24577453-24577608,24577686-24577802,24577878-24577957,
           24578173-24578377,24578485-24578687,24578882-24578933
          Length = 1350

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -1

Query: 240 LIIGVDHFIGSDV--CYIDFAFFCMFYIYLNTPSTGF 136
           L++ V+ FI   V  C   F   C FY+ + T  TG+
Sbjct: 851 LVLAVECFISGTVVRCMKTFTALCQFYVEVKTAETGY 887


>02_03_0317 -
           17659356-17659634,17660028-17660552,17660587-17660661,
           17661699-17662496
          Length = 558

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = -1

Query: 528 HFLISSVCVIRYSVFI---IYNQCDPK--VLHVANDCQSFGALVGRVQNRFY 388
           H+ I S  V+  SV +   + N  DP   V HV  D  + GA+  R + +FY
Sbjct: 223 HYAIFSDNVLAASVVVRSAVANSLDPSKHVFHVVTDRMNLGAMQFRCKKQFY 274


>01_06_0271 -
           28055367-28055402,28055503-28055622,28055710-28055892,
           28056006-28056145,28056347-28056595,28056706-28056823,
           28056924-28056999,28057096-28057162,28057282-28057369,
           28057506-28057616,28058127-28058221,28058305-28058344,
           28058736-28058812,28058978-28059026,28059464-28059520,
           28059624-28059713,28059833-28059896,28060076-28060245
          Length = 609

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/40 (27%), Positives = 25/40 (62%)
 Frame = +1

Query: 271 NNSLQISDRQQELMCLAQDEFGLQQDRDHVFRLVDGIDKI 390
           + S++I DR++ +  L+Q E+   ++ +++F    G+D I
Sbjct: 459 DGSMKIIDRKKNIFKLSQGEYVAVENLENIFGQAPGVDSI 498


>02_05_0704 -
           31064996-31065214,31065306-31065466,31065583-31065660,
           31066560-31066651,31066775-31066833,31066924-31067010,
           31067118-31067214,31067311-31067495,31067593-31067665,
           31067725-31067805,31067948-31068048,31068133-31068246,
           31068391-31068488,31069789-31069915
          Length = 523

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -1

Query: 186 AFFCMFYIYLNTPSTGFNQF---SSIRDKQKCNFSLIFR*ICPQ 64
           A +C+F+ Y+ +   GF QF   +S R K    FS+      PQ
Sbjct: 388 ALYCIFFAYVGSAGVGFLQFCNLNSFRTKFILGFSVFMGLSVPQ 431


>10_08_1023 - 22341815-22342042,22342179-22342247,22342717-22342840,
            22343193-22343317,22343815-22344276,22344357-22344700,
            22345061-22345406,22345492-22345941,22346760-22347051,
            22347171-22347515,22347611-22347834,22348072-22348563,
            22348664-22349056,22349601-22349741,22349845-22350207,
            22350494-22352683,22353298-22353360,22353434-22353535,
            22353672-22354027,22354326-22354413,22354517-22354750,
            22355508-22355975
          Length = 2632

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +1

Query: 397  ILDSTDQSTKRLTIVCNMQNFWVTLIIDYENAITYYTDTRNQKMDESLK 543
            ++++T   + RL  +CN   FW    +D+  A   + +   Q++ E+L+
Sbjct: 940  VVENTPVGSGRL--LCNWYGFWRAFSLDHNRADLIWNERTRQELREALQ 986


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,710,547
Number of Sequences: 37544
Number of extensions: 303817
Number of successful extensions: 713
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)