Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14o06
         (636 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-1739|AAF54975.1|  310|Drosophila melanogaster CG14367-P...    30   2.3  
AY180916-3|AAN87268.1|  994|Drosophila melanogaster ORF3 protein.      28   9.2  
AF267746-1|AAF82099.1|  715|Drosophila melanogaster rad21 mitoti...    28   9.2  
AF186473-1|AAF01417.1|  715|Drosophila melanogaster mitotic cohe...    28   9.2  
AF132146-1|AAD33593.1|  715|Drosophila melanogaster DNA repair p...    28   9.2  
AF109926-1|AAD04175.1|  715|Drosophila melanogaster rad21 mitoti...    28   9.2  

>AE014297-1739|AAF54975.1|  310|Drosophila melanogaster CG14367-PA
           protein.
          Length = 310

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +1

Query: 238 QSIVDAMINSFNNSLQISDRQQELMCLAQDEFGLQQDRDHVFRLV 372
           +++VD M+ SF   +QIS  Q E+ CL   + G  ++  H  +++
Sbjct: 57  KNLVDYMLGSFMEEMQISPEQFEMACLEGRQQGQGENPFHFHQVL 101


>AY180916-3|AAN87268.1|  994|Drosophila melanogaster ORF3 protein.
          Length = 994

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 379 IDKIKPILDSTDQSTKRLTIVCNMQNFWVTLIIDYENAIT 498
           ID I P+  S D +   +TI+C++  F VT+    ++A T
Sbjct: 728 IDTIGPLPKSEDGNEYAVTIICDLTKFLVTIPTPNKSAKT 767


>AF267746-1|AAF82099.1|  715|Drosophila melanogaster rad21 mitotic
           cohesin protein.
          Length = 715

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = +1

Query: 484 ENAITYYTDTRNQKMDESLKQIVTDHVPDGQIANLQ 591
           ENA+  +     ++ ++++  +  DHVPD  + +L+
Sbjct: 433 ENALIIFNKKGRKRKNDNMSNLFLDHVPDSVVQSLE 468


>AF186473-1|AAF01417.1|  715|Drosophila melanogaster mitotic cohesin
           SCC1 protein.
          Length = 715

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = +1

Query: 484 ENAITYYTDTRNQKMDESLKQIVTDHVPDGQIANLQ 591
           ENA+  +     ++ ++++  +  DHVPD  + +L+
Sbjct: 433 ENALIIFNKKGRKRKNDNMSNLFLDHVPDSVVQSLE 468


>AF132146-1|AAD33593.1|  715|Drosophila melanogaster DNA repair
           protein Rad21 protein.
          Length = 715

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = +1

Query: 484 ENAITYYTDTRNQKMDESLKQIVTDHVPDGQIANLQ 591
           ENA+  +     ++ ++++  +  DHVPD  + +L+
Sbjct: 433 ENALIIFNKKGRKRKNDNMSNLFLDHVPDSVVQSLE 468


>AF109926-1|AAD04175.1|  715|Drosophila melanogaster rad21 mitotic
           cohesin protein.
          Length = 715

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = +1

Query: 484 ENAITYYTDTRNQKMDESLKQIVTDHVPDGQIANLQ 591
           ENA+  +     ++ ++++  +  DHVPD  + +L+
Sbjct: 433 ENALIIFNKKGRKRKNDNMSNLFLDHVPDSVVQSLE 468


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,317,467
Number of Sequences: 53049
Number of extensions: 559460
Number of successful extensions: 1301
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1301
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2662347150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)